RNA id: TU131803


Basic Information

Item Value
RNA id TU131803
length 5489
RNA type TUCP
GC content 0.39
exon number 5
gene id G105373
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15963340 ~ 15984079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAATACATCGTCATTTTATTGTTCTGGCTCAGAAGTTTGTACTTCGGTATTACacatattaacattaaaatgcaaaaaacacaaaacaaaaacatttactgaaCCATGACACAGTGATGCATATTAATATTACCATCCCTTTCATTACAGCCTAAGAATTTAAAGTACATAGTAACCAGATATCAAGTGTAGCTTGTTGAATCCAAGAACCTTCAATTTAGTGagcatgtgaaaaaaaaaaacctatatttATCCATTTGCCTTTTACTGATACCATTTAAATATAACAGAATATTTCAGTTAATAAACgaaaaagcataaaacaaaaatccaaacatcaattaaaaaaagttttttatttagtattcttAAAACTGCATTTACAAAATCACATATGGCTAAGGAATACCAGATTTGAGAACAGGATTGTATACTTCCTCATTTCCACCACAGAATGACAACATGATTTTAAGATCAGAATAACTGTTATAGAGGaagacattttacaacattaatAGATAGTTTTCAGCATTTGGAGAGGGCAAAACAGCTCATCTTGTTTTTGAACTTTTAAATACAGAGTGTATCCTTGTTCTTTGGTGCGGGTATTACAGAGCTGTTAATACAAATCTGTGACTTGCACGATATTGCAAGATAAGATGCAATATGCAAAGCagcacagaagaagaaaaaactaaactcaaGAAAAACATAGGTGCAAAATTCAGAGAAACCTCATAACtgcaaagagctttttattCTACAGGATTTCCAGCACTGCTAAAGTGCAAGTATACTTTCTGCCATTTAGGCAAATATTTCCACTAACAAGAAAGCATGCTAGATATCTGAGCTAAAACATctttaatatattgtgtttgtggtttaaacaaactgcctttctaaacaaatacacaaccttttatacattaaaaaaaaaaaacatccagatcCCATTTTGTTAAAAGCATGCgtttcttttaaaaagcagaattaCACTTGTGTTTACAACAGCTGAAATTCAGTCACTGGCatgttattcttatttattaaatctaaataccaaaaacaaaagtcaaaaaatgtaacattgtatGTTAATAGATGGAACAGGAAAAGAGTAGACAATAATAACCAGCAGAAGCTACAGAtcacattataataaatcataatgtcACAAGAGACCACAATCAAAGCCTTTCAGTCACTGTACATCAGTAACACGCACATCTTCCTGTAAAGTGTTACAGGAACACTCACAACCTGTGGTTACCCAGAGGGAGCTCCAAATATTCCTCGGCTTCACAAGATAGTAAGAGGTTGTCTTCTAAAATGATCATTGTTCTTCGAAGCTGTACAATCTTCAGACATGGTCACATTTCTATCAACATCTAATTTTCCAcctaacacaaaattaaataaatctacaTAGTTAGAGCTACTTTGTCAATAAACTTGGccattttaatgtctttttttgaGAGTCCGCCACAGTCATGAGATGTCAGTGTTATCTGAacCTTGTTATAAACATTAAACCACTCGGGATGATGGTTCATTTTCTCTGCTTGTAAAGCCACCCGAGTCATGAATCCAAAagcCTGATTGAAGGTTTTAAAGTTGAGTTCTTTGTAAAGGGCGTCCCGGTCTTCCACCTCCACCCATCCTGTCGCTTTCAACTCCAGTAGAagctgttctctctctcctggggACAGCCACTGCGAGTCTGAGGCCTGAAACACACAGCATCGCCCCTGAGTTTAGGCTTCTGCTCACTGCAGTGACACATTCCTCTCTATCCTGCTGCCCTGATGCACACTGCTGAACTGCTGAAACCATCATTGCAGACTTTAAGGACTATTTTTGATGCACAGTTCCCTGTCTaatccattaaacaaacaaacagactaacaaatacatattttgaaaaccttttcCTTTATAATAGGAGAATTTTCAGGACCATACCTAAAATCTGGTGTTATATAATTCCTTGTGATTATGAAAAATTaggaaaaacatttgaaaatattgttgTGGTTCAACTGTCTTGTTGCGCACCCTGCTGGGAGAAGTCCATATGGCAGAATCAGGAGGTCAAAGCCTGTATGTAATGTGGTGCAATTGTAAAGGACAGTTCCCTCAAACCAATCAGACCCCAGTAAACAAGATATAAGAGGAAAAGAGATAAGACCCTCATTGCTTAGCGGTTTGATCCTTTCATGTTTACAAAGTGCAAACTTGTGCAATAGTCAACACCAGGTCACTGGATATTTCAAGCTTGTCgttcaatttttaatacatgtttacagaaagacaagtaaaacaaacaaaataatttgtttttaatagcttTTCTGCTTGACAATTTGACAATTTGCTCCTAACAGTGTTCTGACAATCttacaggaaagaaaacagaaatgtgaattattcaAAAGTAACACAAACACTAACTCTACTTATTGAATGGAATCATCAAACACCTGAATGctgtattattctttgtaaaaaaaaatgcaaacaataaaaatacattcatatatgtgtatgaataaattattattttaaatataaagaagTAATACAAAGTGTTTCCAGACACACTGGTATAAAGTTATTTAGCTAAGTGATTTGCCACAAGGGGGCACTACAGTGAATGTAATGAACCCAGCTCTTACTACacttataaatcaaatgcaCATCCTTTTTAATACAACTGAAAAAATCCAGGAAACCTAATTATGATACATGTAGAACTACACAATCTAACACATagtataaaacatacacacttaTTCACTGTAATAGGAAGCAAGGACTGGATTGTGGTAAATGTGTAAATCAAGAGGTTAACCAAAAGTGTTAGTAATTTACAATTaacaaatcattacattttctataacaACATATTTCATAATGAGCAGAATGGCTCCTGTGCATGTGTTTCACTTTCTCTGAGCTGACCAAAGCATGCCTGACTGCAATTCTCAGCCTTTCCATCATTCGAACCTCCTAGTTGTTTATTCCCTCTTTGGCCTCCACTTGTGCCTGCAAGTTTAACATCCTGCCAAAGACATTCAGAatcaaaaatgcagaaaaaatacatatatttagccCCATACAACAGCTTCTGTGAAACACTCTGGTTAATTCCAAATACTCTGATTAATCATTAATGATCCCAAGTAAATGATTAAACACAAGGGTGCACCAGCTGCATCTAAACTAATACTGTGGCTAAGGTTTGGCTAACGACAATAGGAGAACTCATGACATTACACAGAaaatacagattatatatattcttcaaaGCCTCATGcatggatacatttaaacatggcGAATAGATATTATATAGtacactatttacattttaaacactgtaaCCAATACTTAAAAGTGACAGTGGGCATGGGGATTAATTTGATGCATGGGGGAATCTGCAAGGGATAAACCCAAACTGGAGTCTTGAATAGTGATAAAATAGCATGTGGATATCAGAGGAAAACAGGGAGACACATGATAAAGACCTTCTGTGGACGTGTTGTCAGTtcgcacacacatatacacagCTCACTTTGGGCGTCTtggcagtctcagtggagttcTGCTCATCGGCTGCCATGCTATCCGTGTAGACCATGGTGAGCGTCACCGGCTCCATCTCCCCTGCGTTTGTCCCCTCAGACGACTCCTCTGCTGCATCCTGCGACCCCGGCACCCCACTCTCTCCACCGCCACACTTCCCAGTGTTGCCGCAAGCCTCCGCTGCGTCTGCCTGGGAGGCTCTGGTGTCTCCGGGAATCATGGACAGGATGCCGGTTGGTGCCGACGTCGCCTCATCTCCGAGCATTGCGTCTGCAATTTCAGCGGTTTTAAACTGGACGGGCTTCTGGGTCAATTCGGGCTGCTGTTCATCTGCAGCTACAAATTGGCTGTTCACTTCTAAGCTGGATCCCACATGCGATTCATCGGAGGAGGCAGCATGACGGAGAAAACATATGCCATCCACTTATCTACCTGTCAGTCCACTTTACAAGATACGTGTAATGATTATTTCATGGTGTTGACACACAAATGGGCATATGACCTGCATTAAaagtttctctctttttgtacAAAAAGTCAAGAGGACGCCATCAGGCTGCTTTTTTCTAACAGTGACTCCATCTCTGCCATAAAATCGACACAATGCTTCCCAATGAGACTGAAACTAAACATTATTCCTCCTCATTCTTCACTAGATATCCCCAGGCTTTAAAGTTAGGCAAGTTCTTTATGAGTCACCAAATTGactaaaataatgatttaaacaaaaaagctttttattaaGAGATTACTTTTTTTGTGAATGTCAGCATGCAATTGACATGTAATTCAGACAGGATACAGCAAACAAGAGGAAAATCAGTTCTAGATACATGACTTTTCTGTGAAGGTAATCATTGATATAAGAAGTCctgtggcaaaaaaaaaaactttctgctGTGAAACAATAAccatagcattttattttttctgtttaacaCACATGttctacatatatttatatcatatatCAAACGGATTGTTTTGATTGAGTCATTCACATGGTGGATGTATGtgtcaatcaaaaaaaaaaggttttctttttctttttttttcttttgttgaaaAATTACAACACACTCCTTAATCTACAGCACTTAGGACATGCACTCAAATCTTTACTCCTTACAAGCAATGCAATAATTAGGGAAGCAAGACGTTACTCGTTAGTTTCCTGCTCTTTTCCAGAGGGTTCACATAGGGCTCTCTTGTGCATCATTGAGTAGGGGAATGCTGCCGTGCTGCAGGATCCGTAGCCCAGTTTGGTGAGACGAGACAGAGTTTTGATGCTGCCTGGAGGCCTTCCAGGGCTCACCTTGTACCCAGCAGCCTTGGTGGTACCCAGGGGTCTCCCCGGACTTGTTTTGAACCCTGCAGCCTTGGTGGTGCCCAGTGGTCGCCCAGTGCTGGTTCTGTAGCCCGCCGACTTTGTGGTCCCAGAGGGTCTGCCTCTCCTTCCGGATCTTCCCAggcctttctttttctttgagtCCTCTGGCTTCTCGCCGTTCTTGATCCCCACTGTCTGGGGGTTGGGTTCATTCCTGGCATCTTGCCTTTGGCAGGGCATGGGTTTCAGGGTGTTCTGTGGAGGAGGGTGCAGCGGGGGCAGTGGTAGTTGCAGGGGAGGCGGAGGCGGAGGAGGATAGAACTTGCTGGACTGTGAGGTACATAGCTCGAAGTGGCTGACAGGGTGTCTGCTGTCCTCGGCGAGGCACGACGCCCTGCCGCTCATGCAATAGTCATTGGTGTTGCTGGTAACCTGGCGCATCATCTTCTGTGGGGAGAGAAGCGGTAGGGGGGAGAAAAATGTCATTCTGGGCAGTTGGTGTCCCTGACAGAAGTATGGGCCTTTGCACTAGGGGCCAGGGGACTCGGGACTTCCTGATAATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131795 lncRNA upstream 90686 15863032 ~ 15872654 (+) False AMCG00011255
TU131796 lncRNA upstream 90686 15863032 ~ 15872654 (+) False AMCG00011255
TU131797 lncRNA upstream 101650 15859758 ~ 15861690 (+) True G105370
TU131789 lncRNA upstream 124235 15821308 ~ 15839105 (+) True G105365
TU131713 lncRNA upstream 475968 15472259 ~ 15487372 (+) True AMCG00011250
TU131821 lncRNA downstream 12298 15996377 ~ 15997732 (+) True G105390
TU131877 lncRNA downstream 72086 16056165 ~ 16056449 (+) True G105434
TU131879 lncRNA downstream 78835 16062914 ~ 16063749 (+) True G105436
TU131881 lncRNA downstream 83154 16067233 ~ 16067442 (+) True G105438
TU131886 lncRNA downstream 121507 16105586 ~ 16110381 (+) True AMCG00011268
AMCG00011258 mRNA upstream 9563 15948639 ~ 15953777 (+) True AMCG00011258
AMCG00011255 mRNA upstream 89851 15863039 ~ 15873489 (+) True AMCG00011255
AMCG00011252 mRNA upstream 107623 15853886 ~ 15855717 (+) False AMCG00011252
AMCG00011253 mRNA upstream 110956 15850701 ~ 15852384 (+) False AMCG00011253
AMCG00011256 mRNA upstream 136771 15825613 ~ 15826569 (+) True AMCG00011256
AMCG00011262 mRNA downstream 46995 16031074 ~ 16033025 (+) True AMCG00011262
AMCG00011268 mRNA downstream 121571 16105650 ~ 16106386 (+) False AMCG00011268
AMCG00011270 mRNA downstream 135789 16119868 ~ 16124691 (+) True AMCG00011270
AMCG00011269 mRNA downstream 149373 16133452 ~ 16141505 (+) True AMCG00011269
AMCG00011267 mRNA downstream 159760 16143839 ~ 16148914 (+) True AMCG00011267
TU131793 other upstream 107556 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 110951 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 640915 15320780 ~ 15322425 (+) False AMCG00011241
TU131514 other upstream 1342806 14619690 ~ 14620534 (+) True G105139
TU131073 other upstream 3020258 12942380 ~ 12943082 (+) True G104815
TU132132 other downstream 994413 16978492 ~ 16982241 (+) True AMCG00011293
TU132321 other downstream 1800084 17784163 ~ 17788050 (+) True G105778
TU132460 other downstream 3128831 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 3237976 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 4111150 20095229 ~ 20162966 (+) False G106139

Expression Profile