RNA id: TU131866


Basic Information

Item Value
RNA id TU131866
length 2350
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G105427
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16032251 ~ 16035023 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGTCACCACAAGTTTAATAttcaaagattattttatttaagacaaCTATTACATATAACAATTCCGATTGCAACAAGTGCAGTGGGTTTGGTGGCTTCTTCGTAGACTCCAACCATGACGTTTTAACCTCAGGAATATTCAAACgaggcaaaaaaaatatataatcttcaagtggaccagaaaacaaaaacaaggtaaGCCTCTTTAAAGCCAAATgctatttgtaattattttacttatttattattttttaatggcataCTTCTGTTTAGTACTTCTCCGCCTACTGATTTATCATTAACATGTCCTCCAGTATAATCAAACACAATCCTGTCCAACAAAAACgccaatttattattttcaaacatttattacaatttggtttgaaaaacaacaataaatatatttctcttaATGGAACAGCTCCTGTAATATGACAAAAATAACCAGAAACAAATTAACCTCAGAGAATACAGTACCAATGTGTGTAATATGTGACATTCCATTATctaagcttaaaaaaaaactaaaactgtttCAAATGGTATCTTGGGACCTTTATTTGACAAAGGACTAGATTTGGAAGAGGTGCATTTGAAAAATTAACGGGGCATGCGCAAAATTAGTATAACAAAAATGTGCTGACCGCAGCGGGCCATAGTCTGGACACAAATGTGTGGTGTTAAATTTGGATGTTTTTCGAGGTCTACAATTTCTTCATGTTTCCcgatttcattttcattcccgGCCAGAAaaaagggagaggggggagaCAATATATTACACACCATTCAAATTTGTCACCCTGGTCCCAAGTTTCAGAATGACGTTGTTCAAATGACCGTACCCCAGCTCTGTTGTCAGGGTGAATACTGACAAAGCACCGCCATGTCTGCAGACCACAGGTTTCCCATCTGAATGGAACTGTCCAGGTATGCCAGACAACAAGCAATGCATGCATGGCTAAATAATACACGCACATTAAAACAAGGTTAGCTTTATAAACTTAATTCACAGTTCGGATGGTGACCGCATATTCAATCTTATTTTTTACCACttcagtgttcattttaattgccAGATTAGTGAAGTCTCTCCCCCTCAAGCACCCGGCCATGCAGTCTTCAGGGATCTTTCAGGAACTTGGTTTGATAGCAACAtggttttaaatcattaaaaagccACATAGTCACTTAGGGTTGTTCTGAAACTTTGGATCCAGTGGCAAGAACCATAATCTCAATTCACATTCCATGCCTGATAACCTCAGGCAAATATAAAGTctggcattctttaaaaaagaCCAGCAGTCAGTGGCTACCTCAAAGTAAACCTGTATATTAAATGCCAGATAGTTTATGGTGTCTTCGTACTCAAGAAGGATAACAATGCTTTTAtgctttacttttaattaaatcaaatgggGCAGATATAGTCTGGGCTTTAAGGCATCATGCAGCTAGAataactaacaaaaataaagatcttTTAAAGTAACAGATGTATACATGGTTACATGTTCTAGGTTTATTGAgacccaaaaaaaaatatttaaaaaattaacatGATCATTAATCAACACTAGTCACGTCTGTAGTCTTTCCTGTTAAAAAGTGCATACAATTACCATGTTCTCACTTTCACTCTTGCTTTTGGGGTCTGATGCCAAGAAAGTTGTTTAAAAAGAGTCATCCAGTGGGTTTACAGAGTTAACCTGCGGTGATGTTCACACATACAGACTGCTCAGGAAAAGaccagaacaaaagaaaaaaaaaaaagtttctttcAACCGCTTGGACTTAAAATTTTAGCACAGTTGATGCTATATTCTTCTTCtagaaaaatgtgaaaattttATAACCAAATGTTCAACCAATAAAAGTCTATTGGGTTCAAGTTGTACATGTGTGGATAGCGGAGGCAGACTTTATAACCAGACATGGGATCAAATATGGTGAACTGAGACTCCTTTCTGCCACGGCTCCAGAACATCGGCTTTAGTCAATGTATTGCGCCAGCCAACGGAAGCCTTCCCCGTATCCCTGCCTCTTCAGGACACTGCACATAAACACTTCTAGTGGTCTTGTGTTCAGCTCCTTCATCGGAACATTGCcCTTGCCCGTTGTCTGTCCATACAATCCAAACATTTCACGTAACTTCTCCTCACTGATGGCTTCTGGTCGATCAATCTTGTTACCGAGGATCAAGATAGGCACATTTCCAATAGTTTCATCTGTCATTAGTGCCTGCAGAAAACATTAAGCACACAGTCAACACATTCACAGAATATGAGAGTGACAGCTGCATTAGTCTACTGAATTGTCACGAAGGAGAACACAAGCTCACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131742 lncRNA downstream 463127 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 628018 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 635859 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 657488 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 709539 15298645 ~ 15322712 (-) True G105261
TU131884 lncRNA upstream 8406 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 104076 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 201105 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 209673 16244696 ~ 16247301 (-) True G105479
TU132017 lncRNA upstream 620224 16655247 ~ 16725153 (-) True G105553
AMCG00011264 mRNA downstream 7502 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011266 mRNA downstream 27861 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011265 mRNA downstream 32234 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011263 mRNA downstream 46353 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011260 mRNA downstream 55244 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011271 mRNA upstream 8348 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011272 mRNA upstream 75247 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011274 mRNA upstream 114713 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011273 mRNA upstream 163097 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011279 mRNA upstream 505634 16540657 ~ 16579592 (-) True AMCG00011279
TU131862 other downstream 58379 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 58379 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 530118 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 659072 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1963690 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 923158 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1694928 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1716230 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1964645 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2149461 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile