RNA id: TU131897


Basic Information

Item Value
RNA id TU131897
length 1346
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G105454
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16139099 ~ 16141338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAGTTTGGCATTTTAATAAAGCACTTTAGATATATGTCTCTCCAGAAATACACTACAAAACATCTGaagactttaaaaatgtttttaaccattcaaacaaaTACTAGAATACTTACAAGGAGTATTTAAGAGTGTCATCAAGTTCCATGATAGCTGCCTGGTTACCACAGCGATAGCAGTAATTAGGTGCACTGAAAATCGTTACCACGTTGCGATCATGGCACCAGTTATAACCCTCCATCACCAGCTGGTGAGCTCTTGAGACCAAGGTAAGGCCATTGGCATGATTAAAGGTTTCAGAAATATCCTGCCCGAAGGTGTATCCAGCACCTCGAGGAGAGATCCCCCAACCTCCACGGTCATCTGGGTCTGACCACAGCAAGTCACACATTGGCCCCTAAACCAAGGAAATCACATTTGACTCAGAGAGAAGttgaaatcagaaaaaaaggaCTCTCTGAGAAAAGGACTTCAACAGAACAGATCCATCTCCTAACTGGTGACCGTTCAGAGCTGTTGTGAAACTCCAGCCTTTCTACTACAcctataatgtttaatatagtCTTATAATATCTCTGTGTTCCACTAATGGATCATCAATTGCTCAAATTCATCCATGTGTCCGTCTGTGTACCTAAATGGCACCACATGGAGAAAACCAGATCCCCTGGAGATGCTAGAGGATCTTTACCTCATGTGGAACTTCCTGTAGGCGGTCAAGCGCTCTGATGTGATCCAGTGTATCTATAGATGGTGACAATCCTCCATGGAGGCAGAATATCTTTGGAGAAACAGCGAAAGATCAGAAAAGTTGCAATGtagtattattaaaacaaattcaaacactTAACTTCAACTTGACACTCAGGTAACtcatatttgcatttacatCAAACCCAAAGTTTACGGTTGATCcaaattacaacaaaatatacTTTCCATCCGCGAATTGTGAGCTTCTTACCTGGCCATCTACCAAGGCAGTGAGGGGAAGATAATCAAAGAGGTCTGTGAAGTATTTCCAAACATTAGCATTTCCGTATTTCCTTAAACACTCATCGTAAAACCCATATACTTGTGTGATCTGTCTGCTTTCGTGATTCCCTCGAAGAATTGTGATGCGTTCACGGTATCACCTTAAGAGCTACAAGCAGCGTGACCGTTTCCACAGAATAATACCCTCTGTCGACATAGTCTCCCATGAAAAGGTAATTTGTGTCTGGAGACTTTCCTCCGATTCTGAATAGCTCCATAAGGTCATGAAACTGTCCATGCACGTCTCCACACACTGTGACGGGACACCGAACCTCCTGCACATTTGATTCTTTTGTTAAGATTTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131884 lncRNA downstream 90577 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 104076 16032251 ~ 16035023 (-) True G105427
TU131742 lncRNA downstream 569975 15535370 ~ 15569124 (-) True G105326
TU131679 lncRNA downstream 734866 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 742707 15391732 ~ 15396392 (-) True G105298
TU131922 lncRNA upstream 94790 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 103358 16244696 ~ 16247301 (-) True G105479
TU132017 lncRNA upstream 513909 16655247 ~ 16725153 (-) True G105553
TU132092 lncRNA upstream 752622 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 1168452 17309790 ~ 17312068 (-) True G105701
AMCG00011272 mRNA downstream 24140 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011271 mRNA downstream 40920 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011264 mRNA downstream 114350 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011266 mRNA downstream 134709 16000144 ~ 16004390 (-) True AMCG00011266
AMCG00011265 mRNA downstream 139082 15987078 ~ 16000017 (-) True AMCG00011265
AMCG00011274 mRNA upstream 8398 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011273 mRNA upstream 56782 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011279 mRNA upstream 399319 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011281 mRNA upstream 495958 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011283 mRNA upstream 523575 16664913 ~ 16699921 (-) True AMCG00011283
TU131862 other downstream 165227 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 165227 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 636966 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 765920 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2070538 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 816843 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1588613 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1609915 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1858330 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 2043146 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile