RNA id: TU131928


Basic Information

Item Value
RNA id TU131928
length 2575
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G105479
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16244696 ~ 16247301 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTTGAAGACCTGTCAAACCGCATTGatgacatttcaaatgcatccctctctctgttAACACACAATACAATGGACATACCAAACACCCAGTCAattatataaacagaaaaacatgttgCTTGAATCCTGAGACGAAGAAAGTACTACACTGCCAAGACAAACATTGAACTATTACCTATGCATTGACAGATGTCCTCTTGACTTTGAGCTGGCTGTGAACAGTCAAATAAATCTCTAAATATCACAATATCAGCCTTTAGTAAGTAGACCTTCATCTCCTGCCGCCTATCTCTATGTTCTCTGTTAATCAGTCACTTTTGTTActataaaacagaaaagcaggaAATCATATCTACCCATGCTTTagatttattatcatcatcatcattgtatCTGCATGTCTATAAAATACATCCAGaataaagtaaatcaaataCAGTAACTGtcaacaaacaattaaaaataaaaatagcattagAGACAGCCTACTAATAAGTACAAGCCCCATGTACAATTGTGCTTTATTGTCAAAAAAccattgcatttgtttacaatatGTAACCAGAAGCAAATTTTCTTACTGACATTATATTACAGTACCATGCATGACAAGAGTTCCTTCCCATGCTAAAACACAACTAAATATGGTCTTTACAAGGATGACAACTGTTAAACTTGCAATATAATGCACCTTACTGCAAATCAGCATTATTTacacaagaggaaaaaaaaattacatatgaAAATAGTGCATACAATGGCAAACTGAAAAAGGAATATTCATTAACATGGCATCTTAATATTGTTGGCAAAGGccagtttgaaaacaaaacagaaatttaaATGTTCTCTGGTATGACAATACAGATTTTAGATTAACTACCAACCAcctaaaaatatttcaaagtgcAAAAATTATGCAAGGTAATttagggatttttttatttttttttaaatcaatgcacTTCTGAAGTCTTTCACAAAACTCCTTCAATGACCGACACATTGGCAAATAATTCAGCATTCAAACATCTTGTATTACCTCAAAGAAACATccttaatttgaatatttttgtattagtaaaCAAATCAATCTGAGACTCTCAAACTTTCTAATAGCCATCATTTAAGTATAACGAAAATACATTTAGCTAtgcttgaaaaatattttttgtttatggacgcattttttataatttatgtatgcatagtgtatgtgtatattatatacacacgcagcataacaggaaaaaaaaaagcaataagaCGCCTGAAAAGGGGGCATAgaatagaaaattacatttgtttaataagaACCTGTACAAAGGTTAGCCAGAATATGCAATCAAATTCTTGACAATGTAATTTATCTTAATCTTATTAAGATAAGAACAATGTCtccatgtgaaaatgtaaaggCTTTACTTATAGACTTCTACCAATCTGATATGGCAATCCAGTAAACCTCctattaaaaagacaaacttTGAGGTAGGCCCCTGAATGTGGACAGACATGAAGACTCATCTTGGTTGGATAATTAACTACTGAAACTATGTAATGATATGTACTTTTAACATTTCACATCCTCAAACACATCTGAGTTTAGTTTCTACACCTggattttgtttcctgtgtgcATTTCCATTTAAGTAATCTCCCGTGTAATTACACCAAGgaccttttttccccacaaacaaagcactttttttatCTTGCTCTTAATTGGAAAGCTAAGCAAATTAACAGCAGAATAGCAGGTTTCTCAGCAAGTGCTATTtcagggtgtgtgtttgtgcaatacattattttcagttcactattaaataaacatggtCATTTAATGTGTCAATGTGCCTTCTGTTATTAAATTCACTACTGCTTGGTGAAACAGTGCTTTATTTGATATTTACCCAGAAAAGTACTTCATATTCCTGTACATTTCCCAATGGTCTCCAAGTATTACACACAATAATCTACATGGTCAATTTGGAATACAGGTCTCAAGAAACTAGCATAAAAAGtcaacaaataaatagtcTGCCTACCGAGGTATAAGGTTAGGAATAAGCAAGCATGCACATTTAAacccagggagagagagagagagagagagagataaggcAGTAACTAGGAATTAGGAATGCAACATTTGCAACAGTAGTATTTTGTTTACTGAATAGTTTACCTAAATAGAAGTATGGTTTAAAATGAGATTTATGTGAGGCGTGACGCTACCATTATCACTGCCATTATAAATAGTGAAGTGCTCTGCTAttagactatatatataatgaatcaAAAAGGAACTCAACCAAGGAGCTGTCTTTTGAGCTCGAGATTAAATGCCATTTGCCCGTGAGTAGATTGTTGCACGTGGAAATGGGAAGTTAAGAGTTTTTACATTTCATCTAGAATATATAATCGTTGGTCATCTTGAGAGATGGCATGGCTTCATTGACATTTTGGTCCAGTCTGTGATATTCCACACTTCTGGAGCACAGTCCATCCCTCCACCTTCTGCTCTGAGCCAAGAGGTAAATCTAGagtgggaagagaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131922 lncRNA downstream 7011 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 103358 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 196174 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 209673 16032251 ~ 16035023 (-) True G105427
TU131742 lncRNA downstream 675572 15535370 ~ 15569124 (-) True G105326
TU132017 lncRNA upstream 407946 16655247 ~ 16725153 (-) True G105553
TU132092 lncRNA upstream 646659 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 1062489 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 1312101 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 1312101 17559402 ~ 17561795 (-) False G105752
AMCG00011273 mRNA downstream 45157 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 67630 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011272 mRNA downstream 129737 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011271 mRNA downstream 146517 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011264 mRNA downstream 219947 16004972 ~ 16024749 (-) True AMCG00011264
AMCG00011279 mRNA upstream 293356 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011281 mRNA upstream 389995 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011283 mRNA upstream 417612 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011284 mRNA upstream 498296 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011282 mRNA upstream 506355 16753656 ~ 16764495 (-) True AMCG00011282
TU131862 other downstream 270824 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 270824 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 742563 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 871517 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2176135 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 710880 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1482650 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1503952 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1752367 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1937183 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile