RNA id: TU132017


Basic Information

Item Value
RNA id TU132017
length 446
lncRNA type read_through
GC content 0.42
exon number 2
gene id G105553
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16655247 ~ 16725153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccgTTCTCccctgacctctagcatcaataAGGCATTTttgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccccgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatgtatatatatatgtatgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131928 lncRNA downstream 407946 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 417562 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 513909 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 606725 16043429 ~ 16048522 (-) False AMCG00011271
TU131866 lncRNA downstream 620224 16032251 ~ 16035023 (-) True G105427
TU132092 lncRNA upstream 168807 16893960 ~ 16895074 (-) True G105607
TU132221 lncRNA upstream 584637 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 834249 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 834249 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 839016 17564169 ~ 17566963 (-) True G105761
AMCG00011279 mRNA downstream 75655 16540657 ~ 16579592 (-) True AMCG00011279
AMCG00011273 mRNA downstream 455708 16198120 ~ 16199539 (-) True AMCG00011273
AMCG00011274 mRNA downstream 478181 16149736 ~ 16177066 (-) True AMCG00011274
AMCG00011272 mRNA downstream 540288 16110270 ~ 16114959 (-) True AMCG00011272
AMCG00011271 mRNA downstream 557068 16043371 ~ 16098179 (-) True AMCG00011271
AMCG00011284 mRNA upstream 20444 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011282 mRNA upstream 28503 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011286 mRNA upstream 51198 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011292 mRNA upstream 185167 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 209353 16934506 ~ 16935842 (-) True AMCG00011291
TU131862 other downstream 681375 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 681375 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1153114 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1282068 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2586686 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 233028 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 1004798 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 1026100 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1274515 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1459331 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile