RNA id: TU132092


Basic Information

Item Value
RNA id TU132092
length 1093
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G105607
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16893960 ~ 16895074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTAAGTGGTGAGCAGGGGGCAGAGCAAGAGCAAGGGcgtttcattaattaattacttttcccCCCGAATAGTCACACATTGTTTTGGCCAGGCGGGAAACATAACTGCAGGGAACCTGAAATGACTGACACCAACATCTATGTGCAACGGTCTCCaatatgtttaatttgctttggTTCACAGAAGATTTTTCTTGCATGGGTTGTTTTATTACTGCACCAGAAGCATCATATATTTAATTCCAATGCATTACTAACAGATTTACAGATTACttaaaaaatgatgtgaatTTCAGAAGGCAAACATACAGGAGTACAATTAATAAAGAACTACATGCTTGTGCAAGTTAATCATTCTTTCTAGCGATCTCTCGGAACACTTTCTGAAGACATTTATTCACATTAGCGCTATATCTTTATCAGTAATACAAATGTGCAAGTTATCTTTCAAAATATCTAACCCTTATAATCTTTCAATTCTGCAGAGACATATGTATGCTGCAATTTGAAAGGGAGATGCTTTGAAGAGATTGTTACTGTTCAGTTTCAAGTTAAATCAGTAAAAAacgtatttttaaacaaaacagaaaaatcaagGTCTGCAACCCAACGtcaacatttacaaatcacaatGCACATCTGTGTTTAAGGAAAACAGGCGAAACATCATTGGAAATTAAGaaactttttccattttaaaggctgggatgcaattattattatttttaattattCCAAGATAACATACATAAAGTCACAGAGATTTTGATGAACTGAAGGAGAACGAACAGCAACTTCCTCTCAGCATGCCACCTTGTGATGCTCTTCAGGTCAATGAAGATATGAGTTTAGCGATGCAACACTTGACTTCACAATCTCTGAGCACTGCTCAATGTTCTTTTTAATCCTGTAGAAATGCTCCACGTACTCTGAGCGGCCCAGCAGCTCCACAAAGTCTTCATCGTGGGTGATGACCAACAACTGGAAGTTACGTTGCCTGGAACGGCTCTTAATGATCCTGTAAGAAGGAAATCAGtgatataacaataataataataataaagctttgtTGTCCATTAAAAGAATGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132017 lncRNA downstream 168807 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 646659 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 656275 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 752622 16139099 ~ 16141338 (-) True G105454
TU131884 lncRNA downstream 845438 16043429 ~ 16048522 (-) False AMCG00011271
TU132221 lncRNA upstream 414716 17309790 ~ 17312068 (-) True G105701
TU132276 lncRNA upstream 664328 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 664328 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 669095 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 850575 17745649 ~ 17751099 (-) False AMCG00011313
AMCG00011286 mRNA downstream 89670 16776351 ~ 16804290 (-) True AMCG00011286
AMCG00011282 mRNA downstream 129465 16753656 ~ 16764495 (-) True AMCG00011282
AMCG00011284 mRNA downstream 147748 16745597 ~ 16746212 (-) True AMCG00011284
AMCG00011283 mRNA downstream 194039 16664913 ~ 16699921 (-) True AMCG00011283
AMCG00011281 mRNA downstream 229556 16637296 ~ 16664404 (-) True AMCG00011281
AMCG00011292 mRNA upstream 15246 16910320 ~ 16920194 (-) True AMCG00011292
AMCG00011291 mRNA upstream 39432 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011290 mRNA upstream 48858 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011294 mRNA upstream 83524 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011297 mRNA upstream 252941 17148015 ~ 17159586 (-) True AMCG00011297
TU131862 other downstream 920088 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 920088 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1391827 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1520781 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 2825399 14067215 ~ 14068561 (-) True G105050
TU132119 other upstream 63107 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 834877 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 856179 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 1104594 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 1289410 18184484 ~ 18191195 (-) True AMCG00011316

Expression Profile