RNA id: TU132221


Basic Information

Item Value
RNA id TU132221
length 2279
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G105701
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17309790 ~ 17312068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttattatatgaatGATTGCTCTGCTTTACCTGCGTTATTATAAGTGACTTACAATTATTGAACTAaccattttctttattgtttacaATGGTGTCTTGTCATCATCATACCTACCAGAGTACAAGTGTAATAAAGTTTGAAAAGtaccacgcacacacacaaaaaggactTTGCAGCCCGACATTTAATCAAATAGGTGAAAGATCAACATTTACTACAGATGTATAATACAGAAGTCatagaaaactattttttaaatgtttttgtttacattggaTTAACATGTacataattgaaatacaaacaaaacagacttgaATGAAAGCCATATACCAGTGAAATATGATCTGCCcttaattatttctttaaaagatAGTATTTGCATGTATCTTATACAAAATAGACTTTTTCAACCAGTATTACGGTAGTGCAATTTCATAGGCTCGAGCTGATAAGATTACTTTCACACACAGGTCTCCTCTCTCTGAAGTGACTGGCTAATTTCACAGTAATATACAAGAGACCAAAGCCCTaaaccattacaaaatatatatttttattttgttactttactTGAGTGCTATTGTACATCTCCTGTAACTGCCTAAATATTTCTGCTTTGGTCACTGAAGTGTTGaactatacaaaatatacactccAGTTACActttctgttatttatgtaaaacatatggcatatatatatttttttgttttataaatctttCCCATCAAGATAtagaatttacatttatttacaattcaaatgaaatcataTGAACAACTAATATTTCTAACACTTAGAAATCACATTTAGATAcggttgtttaaaaaataaaacaaaaacaaaccaacatcaCATTATCGTCCTTAGCCATTttaactgattaaaataaaattgaagattaaaatgtttaataaaacccAAGAGGATATTAACTGGATTAGtctgtattaatatttgtatagatAAAATATATGCTTAGCTGTATAGCATTTACAAGGAGAATTTACATTTGTCTGATATATTTCCTGAATTTTCAACATAATAGCAGAATCTCAATTTTCTTTatcaattcaaatgaaatgaaaggcaaTCATTAAAACTGGTCTAAAACactgaaatcattttatttttagatgacttgtatttaaatgcaACGATCTTCATAAAAATACGGATTCTCATCACATACGGACATCATTATTATTGCCAAAAGAGGGGCCCAATCAAACGATTTGACAATACCCTGATACTGTATGTGAAAGTAACCTGGAAggataaaacaatcaaaataaacaaactgcagtGGAGCAGGGGTAAAGCGAAGGAAAGCATACAAGGAATAGTCTTGACGAATTACGTTAATGAAGATTGCAAATGAGCAAATGAGACTTAAAATCCATTAATCGTGAATCTCTTTTTGCCACATCAGAGAAAGACTGAACATTTCAACGTCAGGTCGACAGCACAGCTCTGACATTGATCAAGATCGTCGGCTTGCCACTCACACACAGCTCTTTGTCACACACAAGACATTTCTTCAACTGCCTCGTGGCTCCTGGAACTGGTTTCAGCACAGAGATCAGGGACTGTAATGCCATAATAATCGGCATCtccacattacattattattattactgttacaaatctgtaaaatCTCCATTGACTCCAGTTAattacacactttttttttttccttgactATATCCAGAGAACCCGTGTAAAATAAGGCTGTGAGGTGATCTGTAACAACAAGGGGTAATTTGCCACAACAGTGACAGACTACTAGACAGTATGCTGGCCGGGTTTGTGCAGAATTACactagaaattaattaattatgtaataataattagaacTTGAAGGGTTAATGGgctaaaaaaaatagtttcctgCTAAATCTATTGTCGCTATTCTCTTCCAGAAAACTGTAAAGCTTTAATTTAGtgcagtgcattttttttttaaaacaaataagactTACAATTCCCAGATTACAATTACTAGACCTTGCttataaatgcttatttttgtctgaattaaattagatatctACTTTAGTTTgcctattttttaaatgttttgccatgtgaatagtttttttttttaacatctcgTTTAACCTAGTTAgcataataatgaattgaatcaatcaatcattcattCATCATTAAAGTCTTAAAAGCTGCATTGTTTCCTCTGAACTGAGATCAAAAGACAATTAACactatgaatttaatttaaaatattttcctttttgcagGAAAACATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132092 lncRNA downstream 414716 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 584637 16655247 ~ 16725153 (-) True G105553
TU131928 lncRNA downstream 1062489 16244696 ~ 16247301 (-) True G105479
TU131922 lncRNA downstream 1072105 16236128 ~ 16237685 (-) True G105473
TU131897 lncRNA downstream 1168452 16139099 ~ 16141338 (-) True G105454
TU132276 lncRNA upstream 247334 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA upstream 247334 17559402 ~ 17561795 (-) False G105752
TU132295 lncRNA upstream 252101 17564169 ~ 17566963 (-) True G105761
TU132306 lncRNA upstream 433581 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA upstream 435407 17747475 ~ 17751099 (-) True AMCG00011313
AMCG00011299 mRNA downstream 106260 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 150204 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011294 mRNA downstream 305286 16978598 ~ 17004504 (-) True AMCG00011294
AMCG00011290 mRNA downstream 348878 16943932 ~ 16960912 (-) True AMCG00011290
AMCG00011291 mRNA downstream 373948 16934506 ~ 16935842 (-) True AMCG00011291
AMCG00011301 mRNA upstream 383 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011304 mRNA upstream 67658 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011303 mRNA upstream 122434 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011313 mRNA upstream 405558 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011311 mRNA upstream 449842 17761910 ~ 17773165 (-) True AMCG00011311
TU132119 other downstream 348721 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1335918 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1335918 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 1807657 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 1936611 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 417883 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 439185 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 687600 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 872416 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 872416 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile