RNA id: TU132295


Basic Information

Item Value
RNA id TU132295
length 2508
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G105761
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17564169 ~ 17566963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAATGACTTCAGGTGCTCTATAATGCCTGGTCGACACAACAGATGTGTGATGCTCATGGTCATAGGTTGCATTGCCGAAATCCACAATCTTCACATCGGGATTCTTCAGTGTTCTCTCATCACGTTTCTGGATTTAAAGAATTGTTTTAGctgtcaataaaatacaaaagtaaaacaaaaacaagcaataaaCCTAAATAAATCCTCACCATTTTGGGATTATATTCCATGTAATAATCCGAATTCACAAAAAGGATATTCTCAGGTTTGAGATCAGTGTGGGTCAGCTTGTTCCGATGCAGAACTAGAAGAGAGGAAACAATTGAACTTGTCTAATTTGCAAAATTGTACTATTCATAAAACCTTCAGGTCTTttccgtttaaaaaaaaaaaaacactgattgcaataaaaaacattattttacaaaaacaaatgtgcaaaatgtCACTGACTCCAGGAAGACTTTCAGTTCAAATTGGGAgaggtgagagaaagagaaaaaaaaaaaaaaaaaaaaatcctgcccAAATCAAATGCAATATGCACTAATATGTACTGAAGACGTATGAAACAGTTTGGCATACATGGTGGTTATTATTCTAAGGGAAACTTACACACACCAAGCAAATGTTAACAACCTAACATCAGGGAGTCATAACATTTTAGCATTCATATAAGTTTAGGATACTCACAGTGCAGAGCTTTAAAGATCTGATATGCCATTTTCCTGATCTGGTCCAGTGGGAAAGGCATGAAGCCATTTTCCTTCAAGAAGTCATAGGTGCTCAGTCCCAGCAATTCAAACACAATGCAAATATGTCCATGATGATCAAACCAATCTAACATCCGCACACAAGCcTGTTTTCTATCACAGTCAAGGGAATTCATCTGTTCAAGCACTTCAACCTCAGATACAGCGGCTTCTCGGTATCgatcaatattttttatgatcTTCAGTGCTACACGAGCACCGGATTCTCATGATCAATGCATTCAACAACCTTCCCAAAGGCCCCTTCTCCTAAAGTGCACACAATTTCatctacagaaataaacaagcagTTAGAATCTGTGACTGAAACGGCAGTTTACATTTAACAGCATCAACAGGACAAAGTATTTTAAGCTAGCATTCCTTTCAAAATGACCTTTTAGATTTagcattacactttttttttttctttaaagcctAACAAAAACGGGGATTCTGTACTACTTACAATAACACTAGCAAGgtagatttatatttaatactagaaaagcatttattaaaagaaaagttttaaaaacaaatccctgtCAAGCCCCCCCACTTTATCCTAGACATTCTTTTTCCGAAAAGTTAAAAAATTGTTACAAAAATATTCTATACATCTTGCTCTTAGCACGTCTCCACTGTGATAGATCAGGTGACCCTCCTCATCATCCTCAAAACTCCTGGATCTTTTTCTGCGATGACTCCTCTGGATAGGTCAAGCAGGCCGCAACATCATCATAAACCAGAGTGAATTCAGGGCAGAACGcgccattcattcattcagcgGGGAGATATTCAGGCATTCAGATAACGCGCCAGGCCACGGGTGGTTGGCAGGAGCAATTTCAAATTCATCCCCCAGAAATGCACAGGGCCACATAGTTTGtgttacagaagaaaaacatggcAACAAATTTTCAGATAACTTTCAAAATAGCATTGTCACATATGCAAtacaatttgatattttttttcattttacactaACAGTTATGTTTCTTCTGAGGTGGAGTTCTTCCTTGTATTACCTCATTCTAAGCGATTAATTGGGAGACATCCAAAGTtcgttttaaaaaaaaattaagaacaagTGGTCTTCATTTTGCATGTCCTTGTCGGAAACTAACTGCTAAATCccaattgtttaaaaaacacaaaaacataattgcactataaacattcatatttttaaaatcttcttGTCAGTAAAGGGACAAAAGAAAGCTGTTTTATAGTAGTTGCTGTTTCACCAACTATATGCACTAACTGCAGAGATGAAAAAATCCAGGCCTGTATAACAATTACAGtgtccattttcaaaatcaaaactgaCAATACAGCAAACATGCACTGTTTCTTGGATTTCATATGCTTCTAAGaatgatattttaaaaggtgtccatttaaatacacaatataggaaagaaacaaaaggtaCCAGTGACATTAAGCACTAGAGGTAAGCTGGACAGTTGCATACCGAGTAGGAGCGATATGCCGAGTGACTCTCTCGTCTCCTTTGTCTGTGCCTGGGGCGGCTGCTCCTCCGGCTTCTCCCACTCACTCCTGAGGACTTGCTGTAATGGTGCCAGTCTCTGTCCCTGCAACGCACACTCTCAAAGCCCGAGGAGTACTCGTCACTGTGCTCGTGGGCCGTCCGGTCCTTACAGTCCAACTTCTCGTTCAAGGTCTTGGTCTCCAGGTAAtggctattaaaaataaagaatgattaaatataaaagacCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132276 lncRNA downstream 2374 17559402 ~ 17561795 (-) True G105752
TU132277 lncRNA downstream 2374 17559402 ~ 17561795 (-) False G105752
TU132221 lncRNA downstream 252101 17309790 ~ 17312068 (-) True G105701
TU132092 lncRNA downstream 669095 16893960 ~ 16895074 (-) True G105607
TU132017 lncRNA downstream 839016 16655247 ~ 16725153 (-) True G105553
TU132306 lncRNA upstream 178686 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA upstream 180512 17747475 ~ 17751099 (-) True AMCG00011313
TU132315 lncRNA upstream 187364 17754327 ~ 17755758 (-) True G105774
TU132326 lncRNA upstream 230480 17797443 ~ 17800287 (-) True G105782
TU132331 lncRNA upstream 239716 17806679 ~ 17806929 (-) True G105786
AMCG00011303 mRNA downstream 111401 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011304 mRNA downstream 168182 17379726 ~ 17395987 (-) True AMCG00011304
AMCG00011301 mRNA downstream 221407 17312451 ~ 17342762 (-) True AMCG00011301
AMCG00011299 mRNA downstream 360639 17173697 ~ 17203530 (-) True AMCG00011299
AMCG00011297 mRNA downstream 404583 17148015 ~ 17159586 (-) True AMCG00011297
AMCG00011313 mRNA upstream 150663 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011311 mRNA upstream 194947 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011315 mRNA upstream 217077 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011314 mRNA upstream 219957 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011316 mRNA upstream 613683 18180646 ~ 18190597 (-) False AMCG00011316
TU132119 other downstream 603100 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1590297 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 1590297 15963452 ~ 15973872 (-) False AMCG00011259
TU131737 other downstream 2062036 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 2190990 15370402 ~ 15373179 (-) True G105290
TU132307 other upstream 162988 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 184290 17751253 ~ 17751502 (-) True G105770
TU132338 other upstream 432705 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 617521 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 617521 18184484 ~ 18191195 (-) False AMCG00011316

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU163325 True 567 lncRNA 0.42 2 NC_035910.1 10517303 ~ 10518127 (-)