RNA id: TU132321



Basic Information


Item Value
RNA id TU132321
length 442
RNA type TUCP
GC content 0.59
exon number 2
gene id G105778
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17784163 ~ 17788050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGGAATTTGCAGTTGCAGCTGCTGACGATTTCACTCCTCCTCTCTTCCACTTTCAGGCCGCACTCATGGCAGAGCCTCCTGCAGCTGCGCTTCTCCCACTGGGAGAGGTTCTTGCCACTTTGCAGACACTCCCTGGCCTCCGTGCCGTGCAGCCCCATGCTGGCGTTCTTGGCGCAGTAATCCGGGGACTCTTCCAGGTAGATGAGCTCTGTCCGGGCGATGGTGCTGAAAGCCTCCGCGATGGCCCCTCGGTTGTCGGCGCTGTTGCCGGCTCGCATCCTCCTCTTGTCCATCTCCAGTTTCTGGGCTTGGTCGTGCTTCACTTTCAGGTAGTTCCCGATGTCTCTGAACTCGGACAGCTGGAGCCAGCAGGTTTGGACGCTGCAGCTCCCAGACACCCCGTGGCACTTGCAGGATCTTTTCATAGTTGCCCTAATAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132318 lncRNA upstream 15942 17765891 ~ 17768221 (+) True G105776
TU132310 lncRNA upstream 32679 17751250 ~ 17751484 (+) True G105769
TU132287 lncRNA upstream 41776 17734990 ~ 17742387 (+) True G105756
TU132235 lncRNA upstream 405303 17378620 ~ 17378860 (+) True G105715
TU132204 lncRNA upstream 472095 17309759 ~ 17312068 (+) True G105684
TU132337 lncRNA downstream 211586 17999636 ~ 18000343 (+) True G105792
TU132340 lncRNA downstream 244705 18032755 ~ 18033025 (+) True G105794
TU132361 lncRNA downstream 387305 18175355 ~ 18247768 (+) True G105811
TU132421 lncRNA downstream 828800 18616850 ~ 18617065 (+) True G105858
TU132641 lncRNA downstream 1800143 19588193 ~ 19588973 (+) True G106022
AMCG00011305 mRNA upstream 22380 17757826 ~ 17761783 (+) True AMCG00011305
AMCG00011306 mRNA upstream 28405 17752774 ~ 17755758 (+) True AMCG00011306
AMCG00011310 mRNA upstream 33743 17745662 ~ 17750420 (+) True AMCG00011310
AMCG00011312 mRNA upstream 204447 17571125 ~ 17579716 (+) True AMCG00011312
AMCG00011308 mRNA upstream 215935 17563585 ~ 17568228 (+) True AMCG00011308
AMCG00011324 mRNA downstream 282351 18070401 ~ 18076037 (+) True AMCG00011324
AMCG00011320 mRNA downstream 304066 18092116 ~ 18098073 (+) True AMCG00011320
AMCG00011323 mRNA downstream 412591 18200641 ~ 18211863 (+) True AMCG00011323
AMCG00011321 mRNA downstream 431996 18220046 ~ 18244145 (+) True AMCG00011321
AMCG00011322 mRNA downstream 457519 18245569 ~ 18252371 (+) True AMCG00011322
TU132132 other upstream 801922 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 1800084 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 1928379 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 1931774 15850646 ~ 15852389 (+) True AMCG00011253
TU131632 other upstream 2461738 15320780 ~ 15322425 (+) False AMCG00011241
TU132460 other downstream 1324860 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 1434005 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 2307179 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 2324030 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 2330525 20118575 ~ 20162966 (+) False G106139

Expression Profile