RNA id: TU132326


Basic Information

Item Value
RNA id TU132326
length 716
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G105782
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17797443 ~ 17800287 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGATGCAGTGACTCACAGGCTAGCATCAGCAGCTTTCCAAAAAAAGCCCCTCCTATTCTCTCAGGGCCATGAATATTAACCAGTCAAAAGGAGGGTGCAATCGATAACTCCCACTCTCTCTTAAACCCACGCCCTAGAAGAAGCAGCAGCACAGAAGGCACACAggctgacagagagaggaaaaggaaGACAGTAAAGCAGCTCTTGGAAGAATCCACATAAAGcaaaaatgTCTGACAAGCCTGATCTCCAAGAAATTGCCAGCTTCGATAAAACcaaactgaagaaaacagaGACCAAGGAAAAGAATCCCCTGCCGACAAAAGAAATCATCGAGCAGGAGCGGAAAGGAGAAACAACGCCTTAACCATGAAGACAGAAATATTTCCAAGATGGCACTTTGATTTGACTGTTACCcagtttccttttcatttaacaAAGAAAGCTTGCAAACAGCAAGAGGTGCATGATGGGAGGGATGAGCCATGGCACTGGTTTTACATTCCCGTATAGGGGGACTTTTACTTTCAAAGGAAGACGCGGCACATATCAAAATTCTTCTACTTGGTTAACCTGCTGTACACATAtgctttcttcttgtttttttcctccttgttGTTTATGAATAAAGCtaactggaaaagaaaaagattgtaGATGTTTCTGTATACACAGTGCCTCCTGTAGGTCAGTCTCTGTTGTGTCACACATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132315 lncRNA downstream 41685 17754327 ~ 17755758 (-) True G105774
TU132306 lncRNA downstream 46344 17745649 ~ 17751099 (-) False AMCG00011313
TU132302 lncRNA downstream 46344 17747475 ~ 17751099 (-) True AMCG00011313
TU132295 lncRNA downstream 230480 17564169 ~ 17566963 (-) True G105761
TU132276 lncRNA downstream 235648 17559402 ~ 17561795 (-) True G105752
TU132331 lncRNA upstream 6392 17806679 ~ 17806929 (-) True G105786
TU132332 lncRNA upstream 197151 17997438 ~ 17997725 (-) True G105787
TU132341 lncRNA upstream 232468 18032755 ~ 18033145 (-) True G105795
TU132380 lncRNA upstream 375381 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA upstream 440389 18240676 ~ 18244145 (-) True G105840
AMCG00011314 mRNA downstream 3937 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 11601 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011311 mRNA downstream 24278 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011313 mRNA downstream 47794 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011303 mRNA downstream 344675 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011316 mRNA upstream 380359 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011318 mRNA upstream 396254 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011317 mRNA upstream 471125 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 1316210 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 1400209 19200496 ~ 19208029 (-) True AMCG00011334
TU132311 other downstream 45941 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 64375 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 836374 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 1823571 15963338 ~ 15973872 (-) False AMCG00011259
TU132338 other upstream 199381 17999668 ~ 18000445 (-) True G105793
TU132382 other upstream 384197 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 384197 18184484 ~ 18191195 (-) False AMCG00011316
TU132457 other upstream 1302006 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1610081 19410368 ~ 19413015 (-) False G105970

Expression Profile