RNA id: TU132338


Basic Information

Item Value
RNA id TU132338
length 433
RNA type TUCP
GC content 0.47
exon number 3
gene id G105793
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17999668 ~ 18000445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGTCTCCGCAAGttaggagccaggactccccgATGCATATCCAAACACCGCCTGGACCGCCTGCATCACCAGCCAGCGTTGTATCGAGTGAAGAAGGACAAGATCTAACTACAACCTTGCGGGAGACTATCAATCTACAGGTTGAGTTGGCATCTACGGACCTGCGTGAGTTGCTACATATAGTGTTGAATAACCAAAGACTTAGCAAGCTATATAAACAGGATCGGGGATTGAACATGTCTGAAAGTAATAAAAGGACCAATGATGCAGACATTCACGAGCAGGAGTCCAAAAGACCTAGAGAGAATGATCCTGATACGAACAACCCTGGTCAGAACAGTGAAGCTGCAGGTGTTGACAATGGGTTTAGTCGCGAGCTTAGCGATGTTCAAAATATCAACAAAGAGGCTGAAGATGTTCGGGGGAGtaa

Function

GO: NA

KEGG:

id description
ko05206 MicroRNAs in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132332 lncRNA downstream 1943 17997438 ~ 17997725 (-) True G105787
TU132331 lncRNA downstream 192739 17806679 ~ 17806929 (-) True G105786
TU132326 lncRNA downstream 199381 17797443 ~ 17800287 (-) True G105782
TU132315 lncRNA downstream 243910 17754327 ~ 17755758 (-) True G105774
TU132306 lncRNA downstream 248569 17745649 ~ 17751099 (-) False AMCG00011313
TU132341 lncRNA upstream 32310 18032755 ~ 18033145 (-) True G105795
TU132380 lncRNA upstream 175223 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA upstream 240231 18240676 ~ 18244145 (-) True G105840
TU132422 lncRNA upstream 616404 18616849 ~ 18617084 (-) True G105859
TU132493 lncRNA upstream 1233277 19233722 ~ 19244483 (-) True G105918
AMCG00011314 mRNA downstream 206162 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 213826 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011311 mRNA downstream 226503 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011313 mRNA downstream 250019 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011303 mRNA downstream 546900 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011316 mRNA upstream 180201 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011318 mRNA upstream 196096 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011317 mRNA upstream 270967 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 1116052 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 1200051 19200496 ~ 19208029 (-) True AMCG00011334
TU132311 other downstream 248166 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 266600 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 1038599 16958181 ~ 16961069 (-) False AMCG00011290
TU131862 other downstream 2025796 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other downstream 2025796 15963452 ~ 15973872 (-) False AMCG00011259
TU132382 other upstream 184039 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other upstream 184039 18184484 ~ 18191195 (-) False AMCG00011316
TU132457 other upstream 1101848 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1409923 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 1865169 19865614 ~ 19867902 (-) True AMCG00011356

Expression Profile