RNA id: TU132380


Basic Information

Item Value
RNA id TU132380
length 2538
lncRNA type read_through
GC content 0.29
exon number 2
gene id G105823
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18175668 ~ 18247770 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNgagaaattgaacaggtgttcctaataatcctttaggtgagtgtataNNNNNNNNNNNNNCAAATGCCTGAACAATATGATAACAATTTTTCAATGAGAGAAAATTCAATCATACTGATGTTCATTAATCCTGTTGAACATCCATATCCTAGCATATTCTAAAGAGGCAAAAGCTGAggttaaaaatacagtaatttatcCATTAACAAATACACCTGGATTTATTGTGCAAAAGCTGTATTTAGTAGACATACTGTAGGATTCTAAGACTTTATTTTCCCTGTAGTTGACCCAAAAGTAAGATGTGCAACTTTCCTACAGTTGCTTAAAGACAAATTCAAACACTGATTTCCTTactattttaaatggaaattcaGTGTTGTTGTCCTGATGGAAACTATCTataattaatatagatataGCAAGGAATCTTCTGGTTGttgtttgtaataatatatacaagatattttacaatatgaatTATCCCACCATGACTGTggctacacaaaataaattaatatgtaaagtaaaataattaccTTCATGTTTACATCCAGCAATTTTCATTCAGTGCATTCATTCAGCAAATCTCTAGTGATACATGGCTATATTTTCAAAGCTTGATAAACTATATTCAATGAAATGACATAAATCTTGAGAGATTGTATTAAAATTCACAAAGAGGaaaaattaaactttccaaaATCTAAATAACATGGTATAACTCGAGTGACAAACAATACCACAAATATACTGTGACAGGTCACTCAAGTACAACATGGAATTTGTAAAGCGATgacattttgatgttttgtttacaatgctTTGATGAAATGCATCTCTGCATCATGCTACAGGAGCTAAAGCCATGCCATAAGtaccttaaataaaaaaagcttttatttcaaTCAATAGTAACCTTTTATagcttcaaataaaatacactttattgATTGATGCTATGTAGCAGATGGGTACATAATTGTACTGGGGACTAGGAATGTTTATAACACTATCCTATACATGATGACAGTAATTTCATAATGCTAGAGAGGAATTCAGGAATATCATTAGATaatcacaaaattaaaattaattccttGGAGaaatgtaaccttttttttctctgtgtatgaaaatgtaaagctaAACCTAAGATTCCTTTTGGCTTCATCCAATTTGTCTATTATAAAAATGTCAACAGGAGGTTTTAGTATACAATAAAAGCACCTGTTTCAGCAAATGGCACCTTAAACAATCATTATTAAAATCTGAGCAAAACAGAATTGCCAGGGCACATGCAATAATCTGTTATGCTacaatgtacatatacattagaGTCATTCAAGTTAATGTCAGTTGGGTATTAATGCTTTACAATAGTGTTTTACTTTGTATGCCTTTTAATAACAAGGAGGAGACATGTATGGAGGTTTGGGCTACATGTCAAAATAATGCCTAGAGCAttagtgaaaacaaaatgattttgtttcgTGAATATTGGATAGGTTTTGTAGATAAGTATATTTTAAGCTTGAATCTCTTAATAATAACCTCTACCTTGTTTATGCTTAAATACCAGAACATATACACCTAAATGTGTTAATACATAGTGCTTGAGTAATACTGATAATAGCATTAAGAGCATAATTTCAGTTACAAGAGACCAGGCAAAATTACTGGAGcattaaagttttgtttttcatattttttaaaaactttttttggtTTACATGTGTAACATCTTAAGAAgaagaattatttaaataaatcactaagcattttttgcattttacatgtatGTCTCATGGAAATTAAGAAATGTCTTGtggaaacatattttatttacagaaaaggGATACTTTAAGGCAGGGGATTTAATCGATTGGATTAATCAGATTGACACACTTgccataaatataaaaattatcaggaaaaataaaatagaaaaccatTAAATGGGAAGTAATAGCATATAGCATACATGCACTTTAGGAATAATCACTGAAAAGTGagataataattatttttattacatttgataaTGGATTAGTCGGCCCTAAACGATTAAAACCCCTTctcttgatatatatttttgcacacTGCAATTCAAATTTGCATGTCTTTTTAATGTTCAGGGATGTTTTCTGTTCGATGTACattggaattacattttttaataataatatatgttatataagtaAACATTGTTATGCTTAATACACTTCCTGGACCAActtcatattacatattaaatcaGGTAGAAAATATTGTAGTTAGTATTTGCTCAAGTGCTTTCATGTTATTGGATGTTAAATATTGATGATTATGTTATGTTCACATGATGAATTTTGAAGtgagaaaataactgaaataagtTTGCCTGGTGTTtgaaagaatgtatttatttcaatgtatatcTTCAGGTCTGCATCTTTTGTTGAGGAATAAACCTCTGGTATGTGTTGTATGTGTTCTGCACATTACACGTAACACTTTAAGGCCATGTAAACTTTCACTTACAATATCTAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132341 lncRNA downstream 142523 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 177943 17997438 ~ 17997725 (-) True G105787
TU132331 lncRNA downstream 368739 17806679 ~ 17806929 (-) True G105786
TU132326 lncRNA downstream 375381 17797443 ~ 17800287 (-) True G105782
TU132315 lncRNA downstream 419910 17754327 ~ 17755758 (-) True G105774
TU132422 lncRNA upstream 369079 18616849 ~ 18617084 (-) True G105859
TU132493 lncRNA upstream 985952 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 1128743 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 1149023 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 1162598 19410368 ~ 19413015 (-) False G105970
AMCG00011314 mRNA downstream 382162 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 389826 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011311 mRNA downstream 402503 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011313 mRNA downstream 426019 17717626 ~ 17749649 (-) False AMCG00011313
AMCG00011303 mRNA downstream 722900 17434502 ~ 17452768 (-) True AMCG00011303
AMCG00011317 mRNA upstream 23642 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 868727 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 952726 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 962052 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 999854 19247624 ~ 19261952 (-) True AMCG00011332
TU132338 other downstream 175223 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 424166 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 442600 17729951 ~ 17733068 (-) False AMCG00011313
TU132119 other downstream 1214599 16958181 ~ 16961069 (-) False AMCG00011290
TU131861 other downstream 2201796 15963452 ~ 15973872 (-) False AMCG00011259
TU132457 other upstream 854523 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1162598 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 1617844 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 4805546 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 6764435 25012205 ~ 25018332 (-) True AMCG00011445

Expression Profile