RNA id: TU132399


Basic Information

Item Value
RNA id TU132399
length 3435
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G105840
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18240676 ~ 18244145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTCTTTAAGTTAGGTTTTATTTCATGGAAATACAACATACTTTCACTTTAGCTTTCAtaggaccttttttgtttatttgtttttttttcaggacaTGATCACTTGAACAACAATATCATGAACAAAACTTTATGTCACAAATAGAGCCATGTTAACAATAAATTACACCTGCCATGCtaacttttaaaattacatgttttaaattaacatgttCATCCTTTATGGAACAATACAGTGGattcatgtattaataaatacaggtCAAGAAAACAgctactttttaaaaaacaatcattgtAAAACCagttaatactttaaaaaaaccgaaacaaacaaacaacaacaaaaaagagaaaaagagcgGAGAAACGCATTCAACAACGAATAAAACTTTACAACAAAAGCTGCCGTGCATTTTTCACAAGTGTGTTTaactattaataaaaaatggaattgctttcttttaaacataaaatgaaaaaatagatATTCTGGTAACACTGCTAAAGTAAAAAGTCAATACCCATTAATACTGTCTTATCCTTTTTCAGAGAATTGCTTCTCTAAATTAAGAGGAATCAATATATGAAATTGTGCCCTGCAGAAGGtcacaaaatgaatgcaaaacaatcTGACCCTTTTTTTCCACAAATACCATAAACAGGAATGAACAGATTATATGATCTTTGTCACTGCCTTCAGAGCTCATGTGGTCATTCTTTTAACATGATTAAGACCAGGGTTTGGTAtcataacattgtataagtaaGAGGTATGTACTTTGTTCAGTATTTTTACAGTTTGAGCACACATTTATAATGCAAATCCTTTCACAtctaaattgctttttttattttattttatacaatgttataatcTGATAGTTGTAAAAAAAAGAGATGTCAGTGAAACTGCAAATATTAGATATTTGCATAAATGGAATGcacctttgttttttgttgttgttattttagcaAAAAAGCTTACAAGACTTCACTTTCTCAAATACCAGTGAAAAACACACCAAAGCTGAAAGGGGCATTCACACTCTCTACTAAACACTGGtaagaaatgacaaaaaaactaaatactgtagtaaaatgtaaaattgtgtaTATAAAGTGTATTTCTGAATGGTTTTCCCGATtagttatgcatttatttttaaatgtaaaaggtaGCACATACTGAAACACTTAAACATAGGgatgttatattaattaaagcaTCCATTGATTAGGGTAgagttttttatttctaaatacagtAACCTATATTTGAAAAGGGGGTGGGCAGGATGGCCAACCATTTCCACAAAACATCACCTCTTTCTGAGTTAACGTGCTGCATATTTATCAGTGCTTAAAGTGAGAAAACATTTCTAGGTGATCACTggttcttttgtttcttctttacAACAGGGTGAATggaacaggttttattttgatgtaacTCCCAGCAGAAGTAGTGCTCCTCAAATGGAGAATTACACCAAACATATCTGAAACTCATACTACTCTCATTTACTGAGCTGTCTTTTGAGCAGATTTATTAAAACCACCTTGTTAGGAAAGAAAACCTAATTCCAAATTCAGAATACAAAtgttagatttagttttagcaGGTAGAAATCATTGGTTCCATACCTCAGACAGAAAGGAAGTACAGACAGTGGTTATCACAGAATCTCAGTGATAATTGCATTGACATTGACTGCTTTCCTTGACTCCTCTAACTGGTTAGAAATACAGCTAGAGGGCCTTTCAGTTTCAGTGTATATCTTCTTCACAGGGTGTGTTATGGTTACTAAGAGGCAGATTTAGTTGAGCATTAAACTACTGGGCCTAAAAGGTGTGGGGCTAGATATAAAATAACCAAGAAAATAAGCCTGGTACAGCTTTCGGAGCCCCCGAAGAAATCTATTAttcaagaataaaataaactggaagTTAACGGTTGTCAATAATGTGTAGAATTACTTTGTAAAGAAAAGGCAGCTGTCTTGTTACACTTGTGAAGAACTTAAATCAGAGGGAGGCATGCAGACCAATAAGTgaaactaaatgtattattctaacaaattcaatatttacattaagtTGTTCTTTAAACCACAATAATATACatgaattgattaaaaataatttattttctcattcttgAAAAGATTAAAGAGACAAAAAACCTTTgagtgatggggggggggtagtcttttttcttaatttcaattCTGACATTAGTACTGACCCATTGACACATTTCCCTCCAGCTAAATGTTCAGGGTTCTGAAAGACTGTTTCCAATGCTAGCAGAACCTTAATaaagtgtaatatataaaagcaaacaTCAAGGTCAAACTGTGGATGCACCTTAATGATATTATATTGTCAAGTAAAACATTTCCACCCTTTAATGTCCCTAAATATTCTTGGTCTCTGCTGCTCTTCAATAGggtcaattcaatttttatgtttattttggtaaatCTGTTATTCAACAGGTTGGAAGAAATTAATGTcacagaaaacatgtattaagTTGCCTGTTTAAAATGGCTGTCGTTGTATTTAAAAGTTGATTTAGTTCAGTGACAATAAGGCCACTGAAGACATACTGATTTAAAGCAATATTTCTTGTGAAGAACCACATTTCTGTTAAAGGGaaacctttaaaatgttctgctgAAATTGCCTGTGAACATGATGCTGACTGTAACACACAAGGATTGAGGTATAATACTTCTGCAGTCTACAAAGGAGGAAGTAAGTAACTAATTGAAGGCTTAAGGGGCTGagaataatattgtatttaccCTTTGTAGGTAATGACCACTGAAAATTGCTTGCAATGACTGAAGATCAGCAGTCGCAGTTCTTTCCCTGCACCATTAAACTGCAAATTCAAAATGAGAGCATGCGATGATTGGATGAAAATATCAGCCTAGCATTCAAGGCAAAAGGTCGCAACTGTATTTACGGGATACGTAAATCTCGAATACCAATTTGCCAAAAACCAGGTGAAGAGTTTGCTATGTTAAAGGCTTGCAGGGGGGCTTTCTTCAACAGGTGGTGGCCAGGGACTGGTGTATAGGCGGCTGGAAACAGCGCACGTGTTCTACTGTTGAACTGTCCGTCTCTACAGCCTTCATGTACTTGTTTAAGATGGCAAAGATCTCATTGTTTAATATCTGGTATTTTCTGATGCGGTCAGCCATTTTCTTCAAGGGCTAGaaaaggaagaacaaaaaacagtggGGTGTCATTATGTCACTATAGTTTCGTTTGGCAAAGATACAAGTCATAATATGAAACCATGAATTGTTTCCAAAAAATGTTCCATCCTAGTGAAAATGATTCATCATAAAGCCACTCAAAAAATGCAGATTACCATCTTTTCATGCTGTGTGAGAGACGATTATTAAGTCATTATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132341 lncRNA downstream 207531 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 242951 17997438 ~ 17997725 (-) True G105787
TU132331 lncRNA downstream 433747 17806679 ~ 17806929 (-) True G105786
TU132326 lncRNA downstream 440389 17797443 ~ 17800287 (-) True G105782
TU132315 lncRNA downstream 484918 17754327 ~ 17755758 (-) True G105774
TU132422 lncRNA upstream 372704 18616849 ~ 18617084 (-) True G105859
TU132493 lncRNA upstream 989577 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 1132368 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 1152648 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 1166223 19410368 ~ 19413015 (-) False G105970
AMCG00011318 mRNA downstream 43425 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 50079 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011314 mRNA downstream 447170 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 454834 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011311 mRNA downstream 467511 17761910 ~ 17773165 (-) True AMCG00011311
AMCG00011317 mRNA upstream 27267 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011330 mRNA upstream 872352 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 956351 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 965677 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 1003479 19247624 ~ 19261952 (-) True AMCG00011332
TU132382 other downstream 49481 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 49481 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 240231 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 489174 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 507608 17729951 ~ 17733068 (-) False AMCG00011313
TU132457 other upstream 858148 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 1166223 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 1621469 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 4809171 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 6768060 25012205 ~ 25018332 (-) True AMCG00011445

Expression Profile