RNA id: TU132421



Basic Information


Item Value
RNA id TU132421
length 216
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G105858
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18616850 ~ 18617065 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cagtggcagaccacgtgtaacaacacctggaCAGGATcagtacatccgaatatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcaccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132361 lncRNA upstream 369082 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 583825 18032755 ~ 18033025 (+) True G105794
TU132337 lncRNA upstream 616507 17999636 ~ 18000343 (+) True G105792
TU132318 lncRNA upstream 848629 17765891 ~ 17768221 (+) True G105776
TU132310 lncRNA upstream 865366 17751250 ~ 17751484 (+) True G105769
TU132641 lncRNA downstream 971128 19588193 ~ 19588973 (+) True G106022
TU132698 lncRNA downstream 1186106 19803171 ~ 19803475 (+) True G106071
TU132775 lncRNA downstream 1339940 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 1361182 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 1370139 19987204 ~ 19995987 (+) False G106134
AMCG00011319 mRNA upstream 348193 18259800 ~ 18268657 (+) True AMCG00011319
AMCG00011322 mRNA upstream 364479 18245569 ~ 18252371 (+) True AMCG00011322
AMCG00011321 mRNA upstream 372705 18220046 ~ 18244145 (+) True AMCG00011321
AMCG00011323 mRNA upstream 404987 18200641 ~ 18211863 (+) True AMCG00011323
AMCG00011320 mRNA upstream 518777 18092116 ~ 18098073 (+) True AMCG00011320
AMCG00011325 mRNA downstream 185573 18802638 ~ 18822410 (+) True AMCG00011325
AMCG00011326 mRNA downstream 330287 18947352 ~ 18999884 (+) True AMCG00011326
AMCG00011327 mRNA downstream 400157 19017222 ~ 19042201 (+) True AMCG00011327
AMCG00011329 mRNA downstream 437069 19054134 ~ 19090434 (+) True AMCG00011329
AMCG00011328 mRNA downstream 490208 19107273 ~ 19115447 (+) False AMCG00011328
TU132321 other upstream 828800 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 1634609 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 2632771 15963340 ~ 15984079 (+) True G105373
TU131793 other upstream 2761066 15853764 ~ 15855784 (+) True AMCG00011252
TU131792 other upstream 2764461 15850646 ~ 15852389 (+) True AMCG00011253
TU132460 other downstream 495845 19112910 ~ 19117369 (+) True AMCG00011328
TU132491 other downstream 604990 19222055 ~ 19222421 (+) True G105916
TU132810 other downstream 1478164 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 1495015 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 1501510 20118575 ~ 20162966 (+) False G106139

Expression Profile