RNA id: TU132422


Basic Information

Item Value
RNA id TU132422
length 236
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G105859
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18616849 ~ 18617084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccataggcgacgttgttgccggtgatgtctggtaaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatattcggatgtactgATCCTGtccaggtgttgttacacgtggtctgccactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132380 lncRNA downstream 369079 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 372704 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 583704 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 619124 17997438 ~ 17997725 (-) True G105787
TU132331 lncRNA downstream 809920 17806679 ~ 17806929 (-) True G105786
TU132493 lncRNA upstream 616638 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 759429 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 779709 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 793284 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 793515 19410599 ~ 19413015 (-) True G105970
AMCG00011317 mRNA downstream 344645 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011318 mRNA downstream 419598 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 426252 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011314 mRNA downstream 823343 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 831007 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011330 mRNA upstream 499413 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 583412 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 592738 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 630540 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011336 mRNA upstream 679000 19296084 ~ 19307708 (-) True AMCG00011336
TU132382 other downstream 425654 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 425654 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 616404 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 865347 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 883781 17729951 ~ 17733068 (-) False AMCG00011313
TU132457 other upstream 485209 19102293 ~ 19105269 (-) True G105890
TU132572 other upstream 793284 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 1248530 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 4436232 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 6395121 25012205 ~ 25018332 (-) True AMCG00011445

Expression Profile