RNA id: TU132457


Basic Information

Item Value
RNA id TU132457
length 607
RNA type TUCP
GC content 0.46
exon number 2
gene id G105890
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19102293 ~ 19105269 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACATGGTGGGCTGTGAGGTGGGCGTTCAACTGCAGGGACTTGGAAAAAGAGACTCTACCTGATTTTCCAGCCAGTCAGCTCATCAGGAACATGGTCAAGGGCATGATGAGGCTGAGCCAAGATGACTACTTCAGTCGGGTTGGTGGCAATGGCAAGGAAATACAGagagttaaaaacaaacccctccctcttgctgtcagcttttctttttttgggcaAAACAAGCAGCTTAGCAGCCTAGAGAGCTACCTCTCTGAGAAGAGCAGCCCGATGTCCAGGTCCAATGATCCCCTGTCAACCCACAGCAGTTACTTGCAGGAACTCAAAGGCAGGGTCAAAGAGGCGTCAGACTGCTGGACGACCAAAGCTACAATCCAATGGTCCTGAGCACCCCTACTGTTCAGCAAAGCAATCTGAAGAGCAACCATGGTTGGTCACCATTGACTGTCCAATTATGTTGCTCTCATCAAAAATGAACCACCGCCCCTGTAAATAGTGACAGTTCATTGagtattcatttgtattttgttttagaattttctttttaaatgttataccACACATTTGataatttgttgtttgtttttctgtgttccAGGACCCC

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132422 lncRNA downstream 485209 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 854523 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 858148 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1069148 18032755 ~ 18033145 (-) True G105795
TU132332 lncRNA downstream 1104568 17997438 ~ 17997725 (-) True G105787
TU132493 lncRNA upstream 128453 19233722 ~ 19244483 (-) True G105918
TU132565 lncRNA upstream 271244 19376513 ~ 19376908 (-) True G105967
TU132567 lncRNA upstream 291524 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 305099 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 305330 19410599 ~ 19413015 (-) True G105970
AMCG00011317 mRNA downstream 830089 18271412 ~ 18272204 (-) True AMCG00011317
AMCG00011318 mRNA downstream 905042 18196541 ~ 18197251 (-) True AMCG00011318
AMCG00011316 mRNA downstream 911696 18180646 ~ 18190597 (-) False AMCG00011316
AMCG00011314 mRNA downstream 1308787 17786920 ~ 17793506 (-) True AMCG00011314
AMCG00011315 mRNA downstream 1316451 17784040 ~ 17785842 (-) True AMCG00011315
AMCG00011330 mRNA upstream 11228 19116497 ~ 19121979 (-) True AMCG00011330
AMCG00011334 mRNA upstream 95227 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011333 mRNA upstream 104553 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011332 mRNA upstream 142355 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011336 mRNA upstream 190815 19296084 ~ 19307708 (-) True AMCG00011336
TU132382 other downstream 911098 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 911098 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1101848 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1350791 17751253 ~ 17751502 (-) True G105770
TU132307 other downstream 1369225 17729951 ~ 17733068 (-) False AMCG00011313
TU132572 other upstream 305099 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 760345 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3948047 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5906936 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7401674 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile