RNA id: TU132565


Basic Information

Item Value
RNA id TU132565
length 396
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G105967
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19376513 ~ 19376908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagggagagacgcTTGCCTGTCAGGAAGGACACGGCGTCCACAAAGACCAGTTTGTGCAGCCAGAAGTTGAGGTTGTTGCCGAAGAGGACACGCTGGATGCCGTCGTGGAGCCCCAGGTCCTGCACCACGGAGGTGTGCAGCGCGGCACTCACGCCCAGCTGGGGGATGCTCTCTGCAGACTTGGTCTTGGCCAGCAGCACGGGCTCGTAGGTGGAGTGGTTGGACTGGAAGACGGTCCAGTCATCGCCAGGCAATAGGCCCTGCTCGACCTCGTGAGCTTTTGTGATGAACAGGAGGGGGGACTTGGAGTTCACACTGCAGTCCTTCAAGCCCAGGTTGGAGTGCAAAAACAGCGGGAAGCCCTTTAACTGGGCACTGAGCAAACTGTTCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132493 lncRNA downstream 132030 19233722 ~ 19244483 (-) True G105918
TU132422 lncRNA downstream 759429 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 1128743 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 1132368 18240676 ~ 18244145 (-) True G105840
TU132341 lncRNA downstream 1343368 18032755 ~ 18033145 (-) True G105795
TU132567 lncRNA upstream 19885 19396793 ~ 19469364 (-) True G105968
TU132579 lncRNA upstream 33460 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA upstream 33691 19410599 ~ 19413015 (-) True G105970
TU132566 lncRNA upstream 45527 19422435 ~ 19427947 (-) False G105968
TU132569 lncRNA upstream 45527 19422435 ~ 19480084 (-) False G105968
AMCG00011335 mRNA downstream 54474 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 68805 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 114561 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 158674 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 168484 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011345 mRNA upstream 61315 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011349 mRNA upstream 122452 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 140523 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 173319 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 344246 19721154 ~ 19726365 (-) True AMCG00011355
TU132457 other downstream 271244 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1185318 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1185318 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1376068 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1625011 17751253 ~ 17751502 (-) True G105770
TU132572 other upstream 33460 19410368 ~ 19413015 (-) False G105970
TU132729 other upstream 488706 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3676408 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5635297 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7130035 26506943 ~ 26516507 (-) True AMCG00011485

Expression Profile