RNA id: TU132566


Basic Information

Item Value
RNA id TU132566
length 4009
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G105968
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19396793 ~ 19480084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCATAAGGATTGCCTCTGTGCTGCAGCTGGGCTGTAAGGCAGCACTGGTTAAACGGGTTTGAAGTCACTGGTAGGTGTTGATCATTCATTCATCTGTCATCTGTCACTGGAATCAATGCTCAACAGTGTGTCACTGACTAACACcttcattgtgtgtttgtatgtatgtgtatatctgCTCTAGCATAGCCAAGTTGTGGTCGAATGTGGTAGTGGGCATGGGGGCAATCCCCGCATTCCCCCAGCCGTCTAGTCACTTCTTAATCACTGACATCCTCTTCCAGGTGTTCCGTTCAGCATTTCACCAGGTCTAACTTCATACATACCACCCACCCcctgctattttttttaattttatccaAGGGTCTTAAAAATCTCCCAGCTCATTACAGaatcgtttttgtttttgtatgctgAATTGTGTGGCATGTCCAGGACTTTCCACATGCTGCCTGTCTGCCTTCTAGAATTGCCCAGAAGCAACAAAGAGGGCATAGAGAAACAACTTAACTCAATGAAAACGCAAAGTCAGTTTTAAGGTTAATCTCAGTATTAGttcagtgtcagtcagttaaTGTTAATCATTTTAACCCAGACAAATTATTAAGGGTTTTCAATTATATTCCACCCTATTCACCATTTTTTTAGCAGccattacatattatatatcaCTCCAAGATAACTCATGTCACATGTTGGTGTACAAAGGATAATTACTGAATGGTACAAGTTAACCTTTGTTGGAGATTAGTTACACTTGACCCTAGGTGTAATGCAGCAACATTTAACTTAACGGTTCCATAaaatgcacacaatgatacaaaagaaactaaaagggattgtataattgataaatagtaataaactttaaatattCAGTTGGTATGATCATCTCCCAAGATTCAACTTTGTATGTATTAGGGCCTAAtgtttgtgattgttttgtACCAGTGGCTGTTCAAATTGTTTTGGAAAGGaactattaaaattaaaatatgccaTACTGAACACATAACTCCGTCAAAAGCAGCTGGTTAGAAATAccatcttttattttctcacttcacatacatttacatcatTTAGCCCTCTTAAAACTTCAATACATCTTAACTTGTAAGCACGTTAGGTAAAAGAAAGagaatattttcttaaatctaataaacaaatcattcagttgaagattttaaattaaaaaaataataataactgcagtGAAGACTTGAATTTAGGGTTGGTGTTTCCATGCATGTTTGTGGAGATGTGGAGTTCAGTGTGTGGCAGATTTCTACAGCTACCAATTGTGGTTTTAATGCAAAGTACTTTTTGTGGATGGTGATCTAATTATTTTGTGCCCGTTTGTAATTAAGATGCCTTGAAATGGCATGTATAACTAAGTGCAAGGGATCATTCAACACAAAAGACTTCACCACAATCACAAAATGTAACAGGTCAGTCCAACATGGTTCACTGTTACAGTCAATACAATTATTAGgtaaagattttaaaacaaagttacTTTAGTCcctcagaaaaaaactaaatcccaTTTTCCTTAAAGTATTTATCTGCTTGCCAAAAGCGGTTAGTTTCAAATAAGCATTCATTAATATATCCATTAATACATCAGTATATCAAATTTGTAGAGCGCTTCATAGCTGTCTTTGACGTGCATTCCTCCCAGTTATTTTACTCatctacaaaataaacaagaaatggTTAGATTTTCAGTCTTTCAGATACCATACAAAcgttaaaatataaacatttacagtCATATATATCAAGCCATGGGAAGTACAAGAGAATTGACCACTGTAGATTCACTCATAAAAACTCTTGCAGACCCAAGCATTTGATTACATGCTTCTTACTTCACAAGATAATGCATTAACTGGTAATTGAAAGCAATTCCTAGTTGACCTCACCTTTCATCTCCAGCATTCTGGGAATGCTTGGCATGGCCATCATACGTGCAGGTCCTGTAGGACAAAGACATAAGGAGGGTTCACATTGATCAATCTGGTTCTCTCATTGTAGCATCATGTAAAATGATTGAGGTGATCTGAAACTCAATCTGAAGCAACTGGACAAGATTAAGGAAGGAATATGAACATATTAAAATCCTAAACTAAGAACCAAGAACCAATTCCTGTTATCGGCTGCATGTCCTCACTTAATCTAAACCCAGACTTCAGTTCACTTTCGAATGATATTGGCTGACCTACCTGCACCACCATCACACTGAGGTCTCTCACTGCGGGTTGCAGTACCGGGCACCTCCTTTCCGTCCTTGTCGACACACCAGCAGAAGCCGGTGCTGTCCCAGCACTGCAATGGCTCATAGTTACCCTGCTCATCACATTTGGGGCGGAAAACCCCAGGATGCACTGTCTTGGAATTGGCCTCCACCTGGCATTTGGTTTGAATTCCGGACTCTGCAACAGAAAATTATTCTCTCAAGGTATTTGTGTGTTAGCTGCAGTGTAAGACTCAACAGATCTATGCACTTCACAATTGCAAGTGAGCACTGTTAATATTATCCAGTTCTCACATGATTAACAATTAACACACTAATAGTGAGCAGGACGAAAACAATGAGAATAAACAGGAATTAcagaggatatatatatattttttaatccataTCGTAAAGTATTTTTGTGTTACCTTCAATAGGAGTAGTCTGCTCCACAGGAAGAGGGGTTGGCTGAGGTGGTTTCTGCTGGGCCATCTGGAAGACCAGCCATTTGTGCATCCAGGACTCAAAGTCCTGCAGGACAGGAAAGtgaattaagttaaaaaaaaaaaaaaaaacacatggacACCTTTAAAATCATAGCATTGATGCCTGCAAGTGCAATTTTGGTACTGCCTACACAGTGACCAGCAGGAGCTTACACAATAgtgttatatgttttttttctcttaatgcCCTAGTTTTTAGGTCATAATTGTCTCTTCATAATACaacactgctctctctcaccttccaCTCGGACTCCTCCATTTGATCCTTCATGCTCTTCAGGTTCCCCTGGAAAGTCTCATTGAACTCAGGAAGGTTCTGGTCCTgttagagagagggagcaaaGACAGTCGGTAAAGGTTAACCAGATTTATACTTCCGGAGTACATGAGGAAATCTAGGGAACACTCATAAGgtcaataacattttatatatagtcCTTTTTCTTGTACCTGCAGAAGGTCCTTGACTTGCTTCTCCAGGCTGACAGTGGCAGTATTTTCCAGTTTCtttgagaagaaaaaggaggaaTATTTAGAATGCTATTAGTATGGCAACACTATCCAAACTCAGAATGTAaaagatacaaaacaaatgttaaacatGTGCTAAACAACTAATCACCTTCATGGGGGTCTTCTTTGGCTTCTCTGTGTCATCTAGGAGCAGGGGCATTTTGAACATTGGCATATGCAGCATCTTGGGGACAGATGGTGCTGAgggaggggaaaagaaaaaaaaagtgtgaacaTGGGCTTCATTTCTATAGATCCcttgaaattatttttcagaGCCACCTGGTTGCGTACATGATTGTTTGCGAGTGTTCAGCTGCTGCTTCAGACTCTGGGTGTGCTGCTCCAGATTTGAGATCTGATCCTTCTGAGAAAGCACAAAGTATGCAGTGATGGCTTGGCCTGCAATCAGCACGCATGCCAGCAGGGTAAAGCCAGCGATTTTGTACCCACGGTTGGACAAGGCtcCGTCTGTCCGTTTTGCATTGACACAACAGTCTCATCACTGGGGGGGACTTCATTCCTCAAAAGAGACTCGCTTGAACCCTCAGCCATCCTTGCAACTGTCCGCACTGGCACGTCCTCAGCAGGTGCTTCTCGGATGATAAAGATGCTGATCAGGCTGCGCACAGTTTAAAAACTTCAAGAAATAAGGAAGAGCCTGCCCTTTCTCAGTCCGCTGTATAGGAGGGGTGAGCAGAACTGAAACCAGTCCTTATACTGGAAACCCCCATATACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132579 lncRNA downstream 9420 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA downstream 9420 19410599 ~ 19413015 (-) True G105970
TU132565 lncRNA downstream 45527 19376513 ~ 19376908 (-) True G105967
TU132493 lncRNA downstream 177952 19233722 ~ 19244483 (-) True G105918
TU132422 lncRNA downstream 805351 18616849 ~ 18617084 (-) True G105859
TU132642 lncRNA upstream 160228 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 513082 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 643535 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 643535 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 643535 20071482 ~ 20095242 (-) False G106183
AMCG00011335 mRNA downstream 100396 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 114727 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 160483 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 204596 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 214406 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011345 mRNA upstream 10276 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011349 mRNA upstream 71413 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 89484 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 122280 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 293207 19721154 ~ 19726365 (-) True AMCG00011355
TU132572 other downstream 9420 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 317166 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1231240 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1231240 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1421990 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 437667 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3625369 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5584258 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7078996 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10197137 29625084 ~ 29625387 (-) True G107713

Expression Profile