RNA id: TU132567


Basic Information

Item Value
RNA id TU132567
length 4795
lncRNA type sense_over
GC content 0.39
exon number 5
gene id G105968
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19396793 ~ 19480084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttCTGGTTAGAAATAccatcttttattttctcacttcacatacatttacatcatTTAGCCCTCTTAAAACTTCAATACATCTTAACTTGTAAGCACGTTAGGTAAAAGAAAGagaatattttcttaaatctaataaacaaatcattcagttgaagattttaaattaaaaaaataataataactgcagtGAAGACTTGAATTTAGGGTTGGTGTTTCCATGCATGTTTGTGGAGATGTGGAGTTCAGTGTGTGGCAGATTTCTACAGCTACCAATTGTGGTTTTAATGCAAAGTACTTTTTGTGGATGGTGATCTAATTATTTTGTGCCCGTTTGTAATTAAGATGCCTTGAAATGGCATGTATAACTAAGTGCAAGGGATCATTCAACACAAAAGACTTCACCACAATCACAAAATGTAACAGGTCAGTCCAACATGGTTCACTGTTACAGTCAATACAATTATTAGgtaaagattttaaaacaaagttacTTTAGTCcctcagaaaaaaactaaatcccaTTTTCCTTAAAGTATTTATCTGCTTGCCAAAAGCGGTTAGTTTCAAATAAGCATTCATTAATATATCCATTAATACATCAGTATATCAAATTTGTAGAGCGCTTCATAGCTGTCTTTGACGTGCATTCCTCCCAGTTATTTTCTCACCTTTCATCTCCAGCATTCTGGGAATGCTTGGCATGGCCATCATACGTGCAGGTCCTGTAGGACAAAGACATAAGGAGGGTTCACATTGATCAATCTGGTTCTCTCATTGTAGCATCATGTAAAATGATTGAGGTGATCTGAAACTCAATCTGAAGCAACTGGACAAGATTAAGGAAGGAATATGAACATATTAAAATCCTAAACTAAGAACCAAGAACCAATTCCTGTTATCGGCTGCATGTCCTCACTTAATCTAAACCCAGACTTCAGTTCACTTTCGAATGATATTGGCTGACCTACCTGCACCACCATCACACTGAGGTCTCTCACTGCGGGTTGCAGTACCGGGCACCTCCTTTCCGTCCTTGTCGACACACCAGCAGAAGCCGGTGCTGTCCCAGCACTGCAATGGCTCATAGTTACCCTGCTCATCACATTTGGGGCGGAAAACCCCAGGATGCACTGTCTTGGAATTGGCCTCCACCTGGCATTTGGTTTGAATTCCGGACTCTGCAACAGAAAATTATTCTCTCAAGGTATTTGTGTGTTAGCTGCAGTGTAAGACTCAACAGATCTATGCACTTCACAATTGCAAGTGAGCACTGTTAATATTATCCAGTTCTCACATGATTAACAATTAACACACTAATAGTGAGCAGGACGAAAACAATGAGAATAAACAGGAATTAcagaggatatatatatattttttaatccataTCGTAAAGTATTTTTGTGTTACCTTCAATAGGAGTAGTCTGCTCCACAGGAAGAGGGGTTGGCTGAGGTGGTTTCTGCTGGGCCATCTGGAAGACCAGCCATTTGTGCATCCAGGACTCAAAGTCCTccaCTCGGACTCCTCCATTTGATCCTTCATGCTCTTCAGGTTCCCCTGGAAAGTCTCATTGAACTCAGGAAGGTTCTGGTCCTgttagagagagggagcaaaGACAGTCGGTAAAGGTTAACCAGATTTATACTTCCGGAGTACATGAGGAAATCTAGGGAACACTCATAAGgtcaataacattttatatatagtcCTTTTTCTTGTACCTGCAGAAGGTCCTTGACTTGCTTCTCCAGGCTGACAGTGGCAGTATTTTCCAGTTTCtttgagaagaaaaaggaggaaTATTTAGAATGCTATTAGTATGGCAACACTATCCAAACTCAGAATGTAaaagatacaaaacaaatgttaaacatGTGCTAAACAACTAATCACCTTCATGGGGGTCTTCTTTGGCTTCTCTGTGTCATCTAGGAGCAGGGGCATTTTGAACATTGGCATATGCAGCATCTTGGGGACAGATGGAACAGAGAAGGAGAATTCAGCTACTTTTTACAGAGGGAGATAAGAGAGCCTTTACCCATTGCTGGTTCAGCTACTAAAAGAGCCAGTGGTTTGCTTTCAAAGGGCACCTTAAAACCATTCTACACAAGTCAATCTTGGGTACAGAAATAAAGCTGGATTAACATATACTTAAAAGTCCAGTCCATTTCCATGTTGAAATAAAGTAGAGCTGCTGTGAAGATAAAACATCTTGCCTCCTCAGTCTTCCTTTCCTAGTTTGTTCTTAAATAAGCAGACAGCGATTTGTTTTCCTCACCAGGTCGGGCATGGCAAAAAAGCATCTCATTATTCTATTCACACACACGTGCAAAGATGCTCCGGCAATTTTCCACTTTGGGGTTTAATTTACTGCCCTCCTTTTGTCTGTGTCTGCTTCTTCTGAAGATACAATTCAGAGCATTTCCTGTCTGTGAAGAGATGCCTGAAGTAGCCATTTCTGTCCAATTCACTTCAGCTACAGGTTATTATTGCAGTTTACAGAGCATTTACTTAAACATCTCCATCTCCTCTCTATAATCTACTTGCTCCGCAGTGCACAGCTGCACTTCAATTCTACAGATCCAATAGTGAACAGAAGGGGGCAGTATTTGTGCTGCAGATGCGGACGGTAAAATACACTTAGTTTTCAAACAGGCCTTCTGCAGATGTTCAAATCAGACAAACGTGCAGTGCAGTGGTGTGTAAAACGCATTAGATTACTTCAGCACATCACAGAATTAAAACCGTTTTGGCTTGTTTTAGATATGACATTAAATTCAGAGTATTTCCTACCATAAATGTTGCCCTTTCAAGGCACCGTTGCTAAATTCCCCATTCGGTGAGACGGAACAGGATTGGCGGTGGGCACAATGACATCACGTGTTCTGCAGGACGCctagttttgttttctagttATTTCATAGTCCATCACAACTGTTATACTGAAGAGTGCATTACTTAGTGTTGCACAGCAATCTGCACTGCAATTTAGTATTTTAACTGCAGGGAACCAATTACCTAAATTAGTCTTGCTAAGTGCTGCCAAGCTTATTCTCACTGCGAGACGGCAGAACCGAGTAAaattaagaaaggaaaacatttgagTGGTTCTGCGGAAGCACATTCTGAAAACAGCTCCCTGCTAATTGCAGTGAGACTCACACGTGACCCACAATTGTCCAAATGAATGTGATAAGATTCTGGAAAGCGTTACGCTAGGCTTGTTCAaacttttatgtaaatgttcttTATCCAACACACTACACTGTcctttagaaatgtaatttgaaagtaTAAATATAGTTGGTGGTCCTTCTCTATTGCATCATTGCATCATATCATCTTATAACTTCAAGCCTTTTAAATATCTGTGCGCTGCAGAACCTCAATAAAATCAATGGAGaggagaaaacaaagggaacacAAAACTAGCTCTGAAAGAAATGATCCTGTGGATAATCCTAATCCATTTAGTTGAAAAACTATAATTTTTGATTAGAAtactaataacacaaatacactgTGGATGTATCCCCTAAACTGGAATTGCATAAACGCCTTCATTCTTAGCTCAATTATTCACCCTATTTTGTGCGTTTCATAAATTGCATGTTTATAATGCATcacaacacattttgttatgcTGACCTCATGCAATACCTGCACAACCTTTACAGAATGCTTGAACAGTTCCTCGTTTGTCTGAACTTGATACATATTTGTCCTTCATGGTCAAAACATTATGCTTGATggttaaaaacatacaaatccaTCTATGAACAATTACTCTAAGCCACTTCTGTCCATTTTGTGAGGACTTTATAGATCAAACAATGTCCTTGGGAGAATTGTTGAAATTGGCTTTAAAACTACGCTAGACTGTGCCTCGGTGACCACCACAGTGACCAAGGCTACAGCCAGGGCAGGCCGAGGGTGGCACTAACCGATTCTTCTGCATAACAGTGATATACTCCAGGCTGGAGATTAATATTACACACTTCAAATAATGTCTGCCGAAGCATGTCAGGATTAACTCCTGACAGTATTCCTTGATCCCGACTCCCCCCCCCTGCATTTTACGGTTACTGAAACTCTCTTGGATCATCACTGCTGCGTTTCATCTTTTGAAGTCGTTCTGCAAAAGTGCCTCCTGGGGCGTTTTGATGTGCTATTATATAAAACTCCTGCCATGCATTCTGCCACttcttgataataataataatgataataataacaataataataaaaactacaacTTTAAAAGTTGAGGCTCTTTAAGGCGTACAAAGATTCCTTGAATAATTGTGACCCTGGGGCGTCATCTCAGTATTCCCATGGTAGCTCTCTTGAAACACTTACGAATGTTTTAAGTCCTTGTTTCATAACTAGAAGTGAAGACACAGCAGGCCCCCTCGCTGGGATCTGTTTTCCAATCTCATCTCTCACAGGCGATGGCACCGAGATACAAGCCAATATTGTTCAATACAAATTCTCCCCAATATACATACTTCCCTAGTGATTAATGTGATTAGAAGAGACATGACTTCCTCAAGCCTGAAAACACAGTGTGGGTTCTGCTGTACATGCTTGTAAGAAGGAATACAGTATAGGAAATAAACCTAAAAAATCCCTACACAATACGGGTTAATTCTCAATGTGGTACGAGTGTAGGGAAGATTATAATCCTTCATGCAACAGATCAATTATCAGGTATTCttgcctttttaattataaattcaCTCGGAGGtagtaatttaatttccaatgaTATTAATCAGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132565 lncRNA downstream 19885 19376513 ~ 19376908 (-) True G105967
TU132493 lncRNA downstream 152310 19233722 ~ 19244483 (-) True G105918
TU132422 lncRNA downstream 779709 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 1149023 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 1152648 18240676 ~ 18244145 (-) True G105840
TU132642 lncRNA upstream 118811 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 471665 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 602118 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 602118 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 602118 20071482 ~ 20095242 (-) False G106183
AMCG00011335 mRNA downstream 74754 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 89085 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 134841 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 178954 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 188764 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011349 mRNA upstream 29996 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 48067 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 80863 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 251790 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 261128 19730492 ~ 19759043 (-) True AMCG00011357
TU132457 other downstream 291524 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1205598 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1205598 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1396348 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1645291 17751253 ~ 17751502 (-) True G105770
TU132729 other upstream 396250 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3583952 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5542841 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7037579 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10155720 29625084 ~ 29625387 (-) True G107713

Expression Profile