RNA id: TU132572


Basic Information

Item Value
RNA id TU132572
length 1536
RNA type TUCP
GC content 0.45
exon number 2
gene id G105970
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19410368 ~ 19413015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTTTGCTTTTATAAATCAAATCTGAATTAACATGTGGTggtcaaaattaataaaaggtGGAACGATTGTGTCTTTAAATCTAACAGATGAATTACTTAAATTCCATAGATGCACAGAGACAAGTCAGAGGTGGaacatgcaaacaaaaccaaaaacagccAAGGtggatttgactttttaatgactGACGCagcaaatataaacattttacagacgACGTCCACGACGCCCACCCTTTCTGCGGGTGCTGTCTGATGGGATTGGGGTGACGTCCTCTGAAAGAGAGATGAACACTGGTTTGAACCATCACTCAATACAAGAACAGAACAGTCAAAAGAGCAATGTGACAATACTTTAGTACCCATTAGTATAGGTTATGAAGTTATGAAACTACAGGGacaaattgttatatttaaaacacatttttaacaatattcACCTAAAACTGAGTAACATTTCTAATTCCTTAATGCCCAGTTCAGGGTAGGTCACTGATAACGTAATGTTTTCTGGGCTTCTTGGTCAGACTTACCGATGCGGCCAATCTTCATGCCAGATCTAGCCAGAGCTCTGAGGGCAGACTGTGCACCCGGTCCAGGGGTCTTGGttctgtaatattgaaaaacattaaactgcTATTCCACCCTCCAGGAACAATATAGGACATCAAAGACATACtgaactattatatatatttaaaagcctGGGAAAAGTGATGCTGTATTTACAAACATCTGAAGATTCATGAAGTGAGTTTCCAGGCAGTTGCCGCTGAATTAAACTGGTGACAGCATCAGTAGCTAGTGGATTCATCAGCCcaatcacattaaaacatgacTTAAAACCTGAGGACAAAAATAACTCAAATTTTGACAAAAGTGGcaactgaaaaacatgaaattgaGAGGAACATCCACCTCTGGCAgcacaaggaaaataaaacatgttctaCTCAAGATTAACCTCTTCAGATCTACCTGCATCTGGAGTCAACGCACACAAGAGGAGACGCATTAAAACCTCACCTGTTGCCGCCAGTGGCCCGCAGTTTGATGTGCAGAGCCGTGATCCCCAGCTCCTTGCATCTCTGGGCCACATCCTGAGCCGCCAACATAGCAGCGTAAGGAGAGGACTCGTCTCTGTCGGCCTTCACCTTCATCCCACCGGTCACACGGCAGATGGTTTCCCTGCGAGAGCCACATCACAGGTCAGGCAACGCCGTGTACAGCCACTCAAAGCGGGTCAAGCTCGCGGTGCGCAAGCAGCAGCATCGCCACGTAAAAACACACTGGATGACAGGTCAAGGAGTGCAGCGCACACTTACTTGCCAGACAGGTCAGTGACATGGACAAAGGTGTCGTTGAAGGAAGCAAAGATATGACAGACCCCGAAGACATTCTCGCCCTCGGCAACCTGAGGTCCCAGGCTGATCACCTGCTCTTCCTTCTTTTCCTTACCCTTGCGAGGAGCCATTgctaaaaaaaacTATGTGTGTCTTTGCACGGAGCCGAAACAGGAAAGGAAGGAACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132565 lncRNA downstream 33460 19376513 ~ 19376908 (-) True G105967
TU132493 lncRNA downstream 165885 19233722 ~ 19244483 (-) True G105918
TU132422 lncRNA downstream 793284 18616849 ~ 18617084 (-) True G105859
TU132380 lncRNA downstream 1162598 18175668 ~ 18247770 (-) True G105823
TU132399 lncRNA downstream 1166223 18240676 ~ 18244145 (-) True G105840
TU132566 lncRNA upstream 9420 19422435 ~ 19427947 (-) False G105968
TU132569 lncRNA upstream 9420 19422435 ~ 19480084 (-) False G105968
TU132642 lncRNA upstream 175160 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 528014 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 658467 20071482 ~ 20115868 (-) True G106183
AMCG00011335 mRNA downstream 88329 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 102660 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 148416 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 192529 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 202339 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011345 mRNA upstream 25208 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011349 mRNA upstream 86345 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 104416 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 137212 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 308139 19721154 ~ 19726365 (-) True AMCG00011355
TU132457 other downstream 305099 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1219173 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1219173 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1409923 17999668 ~ 18000445 (-) True G105793
TU132311 other downstream 1658866 17751253 ~ 17751502 (-) True G105770
TU132729 other upstream 452599 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3640301 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5599190 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7093928 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10212069 29625084 ~ 29625387 (-) True G107713

Expression Profile