RNA id: TU132642


Basic Information

Item Value
RNA id TU132642
length 798
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G106023
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19588175 ~ 19588972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGAGAGGAACGTACCCTTTCGCAGTCCTTTTGAATTAAAGCCTaactttttcctgttttaaacAGAGGAATCAAGCTCttgtttttaaggtttttttgtttttcctcttctgtTCCTTGGAAATGCAGAGACTGTTCGTTTTCACTGACTTCTGAGGAGAGATTTCAATCATTTTCGAAGGCTGTTTTTTCTGGGACTTGAGGCATTGAAGCTTACCAAAGCATTCTCtcagaacattttgttttttatttggtgcTTGTTTCCACGACTTTGCGAGAAAGAGAACTGATTTAACAAAGAGGGAATTATATCTTAAAAGGGACTTTCactgctgactgactgacatctCTGACAATATGACTCATAGAAAGTAGTAGTGACAtatgtatactactactaaaaagCAGAAGTATACATATATCTTCATTGATCATTTGGTCTAATGTTTTGAACTTGGAAAGCTGCTGCAGCAGGATTCTCTTTATCTTTTTAGAAATAAGAAGCTTTTACTGCTTTATCTCTGGCTGCCCCTGTCctttcatttgaataaataaacaaagtccCGGCTCCTCTTTCATGGGCTCAAGGGGCTAAACAGATTACAACAATCATCCCTGCAGATTTGAGGCATCTACCAGAGTTCTACAAAGAGAGCTAATTGGAAACTGTTACTCACACAAGGCAGCTGGAAAGCAGTTCAAGACCTGGACAGAAAGCACCCTTGGACAATGTTTTAGCCCCTCAAAAAAGGGACTGTTGACAAAGTAGACATTGAAGGTaagtctgtttctctgt

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132569 lncRNA downstream 108091 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 118811 19396793 ~ 19469364 (-) True G105968
TU132566 lncRNA downstream 160228 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 175160 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA downstream 175160 19410599 ~ 19413015 (-) True G105970
TU132842 lncRNA upstream 352057 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 482510 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 482510 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 482510 20071482 ~ 20095242 (-) False G106183
TU132870 lncRNA upstream 482510 20071482 ~ 20112210 (-) False G106183
AMCG00011350 mRNA downstream 17847 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011348 mRNA downstream 48535 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011349 mRNA downstream 74855 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011345 mRNA downstream 144024 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011335 mRNA downstream 266136 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011355 mRNA upstream 132182 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 141520 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011354 mRNA upstream 228495 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011356 mRNA upstream 277147 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011362 mRNA upstream 320970 19909942 ~ 19912905 (-) True AMCG00011362
TU132572 other downstream 175160 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 482906 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1396980 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1396980 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1587730 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 276642 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3464344 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5423233 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6917971 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10036112 29625084 ~ 29625387 (-) True G107713

Expression Profile