RNA id: TU132775


Basic Information

Item Value
RNA id TU132775
length 4365
lncRNA type read_through
GC content 0.36
exon number 3
gene id G106134
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19957005 ~ 19995987 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATCTACTGATAAAGGATACCTGGTTGCGAAGGTGATCGCCATTGACGCTGATTCGGTGCAGAACTCCCGGATTACATATCAGTTCCTACAAACTACTGACGCTAGTTTGTTCAGTCTGGACCAGTACAATGGGGAAATCCGGACAATGAGGATGTTTAGTCCAAGAGATTCACGCAAACAACGACTGATTGTTCTCGCAAAGGACAACGGAGATCCCGCTCTGTCTTCTACTGTTACCATCAAGTTATCAACATTGGATCCCGCTTCCAAAGCTTTGTCAGGACCGACTGAGGTGTCTTTGGAATATGATATATTTTCTGATTTGAATCTGTACTTGGTTATCGGTTTGGGATCAGTGTCGTTTCTCTTCTTGATCACTATATTAGTTATTATCGTGCTGAAGTGTCAGAAACCGCATCAAAAGCAACCGGCTCCGTCCTGTAGGAACAGTTTCGTCAGCCAGAGGAACTCTATGAAACAAACTCTATAGTTTGTTTCTGGCAGAGTCTCggaaaggaaacatttttgtCAGACAACCTGCACCAAACGGGTCTGGATACATCGTGTCCAGCATACCGAGGAGTACAGGGATGACAGAGACAAGTACTTCAGCCAATTCAACACTGCAGGAGTCCACTAGTGGTTTCCCATGAGGCTTTCCTGGTGGAATTTCGTCAGGATGAATCCATCAGACACAGAGAAAAACCTCCCGAAACACCAGACCTCAGGATAGCGATGACGTGACCTGATTCCTCTCAGCCCCGATCACCTTCCCTGCGTTCTCCTGACTGACACGACCGACATACCATCCAGCATGACTCTGCATGGCTATAGAAACAGAATGacagaatttaaaaagaagaaaagaagggaACAAAAAGAACATTTCTGCCATTTCTCAAAAAACCCcaataaaagcaggaaaaaatgagagagacagacaataacaaaaaggaaatgacCTCCACGCTGTCTTTGAAGGATATCAGCTTTTCAAAATCCCAGACAATCTCTTCTACTGAGgaatttggaaaaacaaaggGACACAAAATAATGCCTTTTACTATAGTCTGGTAGGCCCTTCCTTGATGGGTACTGTCTTAAGGGCAAGTGTAGCATGTATTATTGAGAAGCCATTTTATAGCTCAATTAAgggaactttattttatttatgattccACTGAATACTTCTAATCAACTACAgagttattttcaaaatgcttgAAGTCATGAGGCATTTAagaaatagtattattattattgctacttAAGACCTGCTTTAGTTAGTTTCATTTCCATCTAATCTCAGAAGAAACAAACCTACAATGTTTAAGGAGCAGATGGCTGGCTTTCATAAGTCAAAAGCAAGCCAgcatctgaatacattttccttaaatAGCTCATGACTGAAAGATTTATGAATTAGACCCGATTTCAGTAAGACTGCTTATTTGACATCTTGTGTTATATTTAGTAATGAGGATAAGATTTGCTCACGATTTCTTTAAAGCTGTCAAGACATTTATGTGCAACgctgcaaacaaaaaatatggtTGGTTGATTATGGTGGCTAACTTTTATTACTAAATACAATACCTCAAGCTGAATTACGCTAAACCTTTCCAAGGCAATTGTCCTCTTTAGTTTCTTAcactgtgattaaaaaaaaagatgaattgTGTCAGTTTTTAGAAAATTAGCCACTTGAATGGACCTTTTTACCTACCATCCAAGTAGACTTTATCCTCTCTAAAACATAAAGTTGTTTAGAAAAAAGACTGTTTTGAATTCAGATTACATATTGTGAGTCGTAGATTACAGTATTTGTTGTGTTGAATTAATTTGTGTGATTCAGTAGACTACATTaatagaataaacaaaacaacataaatatagTGTTGGAATTGTGCAATTAAACACTCGCCaggttttaatgtttacatttattttatatgatgtatgattggggaaaaaaaatgagatgttgattttatacattttaatgctgcTTTGTGTGTGATCTAATATCCAAGTGCTTTCTGTAAAGTATTATATCAGTGGTGCAATACATAGTCATTAAGCtttttacatactgtatattacataAACGTATCACAATAATAGTGGTGTATACCACAGCTTTACATGTTACCAAAATAGTAGAGATTGTAGTAGTTGTAGAGTAGAGTTAGTGAGCTATTCTCAAGTGGGCCCataacatatatttgtattatttaagcCTGAAGGAGATGTCCCCCCAGTACAGAAGTTGAATTCATTGCTAAATAATATTCTATGCAGAACTGTTATATAGGAAGAATACTAGATTTCCCTGTCAAACGtgttgtgaaaaaataagagggaactataaaactataaaaactgctttttattttaggaaacgCAGAGGTATAAACCAATGAGATATGCATGTGTTCCACTGTCAGGATCTGAATAGATACTGgccagtttatttttctttggtgacctttgacctcaTCAGTGGGAGGCACTGCACAATGTAGACGATGTTATGCTTTGTCAGTTAGTTAATCTGTGTGACTGCAGGTTTGACTGAAAGCCTTAATATGTCAGCTGTAATAGGTGCTCTTGAATTCAGGATTCATCTATCAGGCCTTTGGAGGGATAAAAGggaacattttctcttttattttcatattgttgGAGTCTGTTTGGGTTTGTTTATCGAGAAAGATGAACACATACTGTATCAGAACTGTGATACATCATTGTGTGACTGATTTGTCTCGTTATTGTTATTCTATGACTCCAGAGTCATGCATGCAGtgaaatatcatttaaaatctgaTGAATTTTCTTAAAGGggttctttaatttaaatgacttGATAACAGAATGTTACATGTGGGTTTAATAGTTACATAACCAGCCCCCAAACTATGTTTTTAACTCAGAACAATTTTAGATACCTTCAACTGATTGGCACCTTTAAATGGCCTACATAATCAGTGTTGTGGGGAATATATTGCTTACATGATTTGCTTGCTAGTAGTGGTCTGTTTTCACTGTCttgctttattacatttaacAGACATATACAACCCCCCTCTTCCCATAGGCGTAAAATGATTCACCCTGATGTAATTTGCTAGGTCCCAGAGTTTTTATGTACTTTGAAAAATACACAGTTTGATGTTAGATCAAGTGTTAtgaatttcttaattttttgaatgcttttaattgaaaacatgtttttttgggtGCTCTCTTTCTTTTATACAAAATTCTGTTGCCAAGTTAAGGCTTTAGCACTCATTTTTGAATAGTGTGTGTGCTACAGTACAATATCATAACCCGAGGTTCATTTGAGATTGTGTCTTATTCAGTGCACTGTTAAAACATAGCTTTGAGACATTCCAGACACTGCAAATAGCATCTGGGCCTTCTGTTCCTTCTGTTAGTATGAGAACAAATGTATGTGTTGGAAATGTATTGTTCTATATGTGGTGTGTTTTTCaaacaacattttcagattttaagtTAGTGGCTGATCTAACTAGTTTTAACTCATAGCTTATTTAAAATCATCATCCACCAAAACatagtattatatttattaataaacaaacaacaacaataaaataaacatttgaggGTTCTTCTATAAAGTCTTTAACatagattatacatttttggtcTTTCAACTTTGGACATAACAGATATCTCTATATAGCTAATGAGTTAAAACTCTGTGGTCAGGATATCTTTTGTATGTAGTATAATAAGCAGAATTGTGTAGTAACATAAAGTATTAAGTGCTGTTATTACAAACAATGTGTGCAGATTGACAGTTCAGAAACATTTCCAGCAGTTTTCTGTACTggcatgattttgtttttcctcacaaGAATTTTAAGCAAAATTAcctatgttttttctttattctattTTACTTTGACCTGTCTAATTACTGCATTTAGCtttctataaaacaaattatttatttaatgaattatgtAAGACTTTTTTATTACCCAAAAGTATATTTTACACCACATCTTTACCCAAAAGATACTGCTTTTCGGGTAAACCTATGGTGAATTGTGTGCCATGGAGCAAAAGAAACCTTTGCTGTTAACGTTGTGTTGTCTCAGTGATGAAATATAGGTATTGGGTGATTGCCTGTTATATGCTGCTACTCACTTTGCATggcatcattttattttggttctgCAGGAGGCTGTCACTCATCTCCTCAGACTATTCAAAGTTGTATGCTAGTGGAACAAAGAACAAGAGTGTGGGCATGAATTGCTTTCTGGTCATGTGTGCTGATGTTTTGCTTGTAAATACTAAAGTGTCAATAAATGCTTTGAAAGTA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132698 lncRNA upstream 153530 19803171 ~ 19803475 (+) True G106071
TU132641 lncRNA upstream 368032 19588193 ~ 19588973 (+) True G106022
TU132421 lncRNA upstream 1339940 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1709237 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1923980 18032755 ~ 18033025 (+) True G105794
TU132784 lncRNA downstream 119984 20115971 ~ 20162966 (+) False G106139
TU132984 lncRNA downstream 619451 20615438 ~ 20615641 (+) True G106277
TU133009 lncRNA downstream 911463 20907450 ~ 20907653 (+) True G106298
TU133024 lncRNA downstream 956235 20952222 ~ 20952712 (+) True G106310
TU133048 lncRNA downstream 1024223 21020210 ~ 21022119 (+) True G106327
AMCG00011361 mRNA upstream 1918 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011359 mRNA upstream 37816 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011360 mRNA upstream 47412 19902161 ~ 19909593 (+) True AMCG00011360
AMCG00011358 mRNA upstream 58747 19889328 ~ 19898258 (+) True AMCG00011358
AMCG00011353 mRNA upstream 69375 19842173 ~ 19887630 (+) True AMCG00011353
AMCG00011365 mRNA downstream 327063 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011373 mRNA downstream 742395 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011374 mRNA downstream 958807 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011380 mRNA downstream 1131123 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011381 mRNA downstream 1231223 21227210 ~ 21236755 (+) True AMCG00011381
TU132491 other upstream 734584 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 839636 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 2168955 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2974764 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3972926 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 99242 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 116093 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 122588 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 300024 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 365221 20361208 ~ 20367223 (+) True G106242

Expression Profile