RNA id: TU132789


Basic Information

Item Value
RNA id TU132789
length 3636
RNA type TUCP
GC content 0.43
exon number 4
gene id G106139
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20095229 ~ 20162966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAGCTCAGACACCCTGAAGAGTGACGTCGTGGTTTTTAACTCACCGTTTCCACCTCAAGATGGAGATCTGATTAGTATTAATGGGACTGACTCTGTTAAACGCAAACAAGCGATCTACCAGAATTTTGAGtccaAGCCTCCGAATGCAGACTGGCGCTATTCCGCGTCTTTGAGGGCAGGAATGCAAAGCTCTGTGCACATGGAGGAATCGGCTGTCCTGCAAGGAGCTCCCGGGGTTCTTGTGCAGAACTGGCCCACAGTGTCCAGTGCGACGGGAGGAGAACCTGAAGGCGGGGAGGTCTCCCCCCCAGTCGGCGCGGGCATCAACAGCAACAGTTGGACCTTCAGGTACGGCCCCGGCCCCGGACACCCCCAAGCCCTGAAACCCGGTGAGGTCCCCGAAGCCTTCATCATCCCCGGCTCCCCCGCCATCATCTCCATCCGCCAGGACCAACCCACCGGCGACGACAAGAGCGACTTCATCACCTTCGGCAAGAAAGAGGAGaccaagaaaaagaagaagaagaagaaggggaagGCCGACAAGAAAGAGAAAGGCGGCAACGACAACAGCGAGCACTAGCGGGAAGGATGTCCTTAAAACAGAGCTACCAACTAAAGTCACAAGGCAGATCAAACAGGAGAGCTCCCTGCTTCCATTTAAAGCCCGCTCCCTTGTTCCCCTCACCAGTGGTTGTAGACCTTATCCCCCACACACTTATCTATCGATTACTGGGAATGAACACGCAGCTTTcgctttttttctccctccccttGAGGCTCTccctaaaaatgaaaaatctttCCAGCCGCCATCCAGTACAGCAGCAACCTAGTCTTAACTGAGAGGTTCGgcctttaaaatgtgcttttatttgtaatgtggAGATTGAATTAGTCAAGCTGTAACACTACCAGCAGCACTGACCTGTAAGGAAGTGCGTTTTGCTGTTTGGCgggctgctgtgttttgtggGTGGCTGAACGGAGCGCTGCTTTCCAACGATTCGAACATTAAAACATGGCCGCGGACCATGTGGCAAAGCGCTGGCACAGCCCTCGAGCCCCGTGACATTCGGGACAGCGCACCGCTGCGGCCACCTCACCCGACACGCAAACCTGGGCtcttacacaatatatactCGGTCAATAGAGCCCACTCTTCATTGCTTCTCGCTAAGATGTAGATAAAGGTGAAAATACGAGCTGTTGCCCCTCCCTCCTGCACCTAacctgccaccccccccccgccacacagAGAGGCTCTCCTTGTAGCAGACGGATGTTGGCATCTCTGTCTTATTGGTCCCGATGCCGTGTTTCTTTAAGGGATCTGATCAGATAGGCAAAGAGTTCCTCACAGGCTTAAAACTtctaatgaaatgcattcaagCAGGACACTTGCAACGCTTGTAAATATTGCAAGATGAGATTATGCAGGTCATTCAGCGTGAAGAGAGGGCTGTACCAGTCAGATACTAAAATGGCCAACTTGGTTTTATGAATCAGTGTTCTGAAGGGGCAATCaggggaccccctgccctgtaACAGTGCTAAAAACAGGGGCCGAACCTTAGGTCTGACCCTGTTGTATTCGAAGGCGGTAGACCTGAGCAGAACCTGAAGACAGCCAAGTCTGGAAGGAAAAAACGCAGCTTTtaccaattattttttcagcacaaTTTTCAAGACAGTGTACATACATAACCCATACAACCTGGATGAGTGAATAATGTGACTTTTTAGAGAtagacctttttattttcttctttttttcggCCCAAAGCTATTTGGGAGACAAGGGGGAATGAAAGGTCggacatctttaaaaaaatatatctccccaaaaaaaaaaaaaaaaactacagagaACAAAAGCAACCTTAAGAGTCAGGATTCAGAACCAATGGTTCCACTTATGGTTTTTGTATGGGTATTGTAATATACAGGGAATGTTGCTAGTTCTTTTCAAGCCGAGCCTGATTCCCACGCTTCGCTCTGAATGTTTTGTAGTAATCCTGGGCTTTGCAGCTTCAAATCTTCTCTCCTCGGTCACCAGCTCTTTGCCTTTGGTGCTTGTACAATTAGCAAGCTTGAGGTTgtttgcaattttattttttggatatGCTGATCATTTTATTTGGAGATCCCAGCATTTAACtatgtactgtttattttttgactGCTTcttcacataataataataataataataaataaataaaaagccacCATAGTAAGATACTATCACAGTGCTTCTATCCAAGCTTTAATCTGACTCAAGTACTGTTATGTCCTATTGTTGAACATGGCTGGAGGCTTGACGTTTTTAAGATACAGAATCCCGAATTCCTCTGTCCCAAATCCACAGCCTAATTTGTACTTTGAGTTTGTTGTATGTTTCTCCTATACATATTACTTATTATACAGAAAGACATTCAGCCCAGGACAGTGGTTCTGCGCCACATTTTGTGGTGGCTTTGAAGTGCAGACATGGATATTTGTAAATGGATGatgcagtgttgttttgttatggAAAATGGTGGAAAGGTTATTGCTCACAAGGGTTGATGTGATCACAATTCAGAAGCACTCCCCTAGGACAGGGGTAAGACAAACACGAGATGAATCGgaattaatgtgaaataaagagcATGATGTTTAgactaaaacaaagaaatatgtaaacaaGCAAATATTCTCCCTTGTTCTTTGGCTTCTGTCCgaccaaatgtttattttttgtaattggtTAACCCTATCCGATGAAAAAGGCGTAAATGATTTTAGGACCTTGTTTGGGTTTATAATAGATTTGTATCATTAGTAAATAAAcgtgaaatatatttatgaaatggctgaaaaaacctaaaaataaaacacgatTTGGGACATTGGGGAattattttccccttttattgataaaaatgcattaaaaactgATACAGTACCAACATTTTAGGCAGTAGGGTTATGCAATCACTGGTATCAAATTGCTTTTCCCGATCTGTCAACTGCAGACGTATAAAAACTCACAGTTCAGTGCTGTCAGATCACTAAGTGGCTGTTGCATGTATTAATCAGAAGAAcagatacagtatatatagagtttttttttcctccattactCACACAAGAGATACCAATATTTTCTCTGCTGAAGTACTTAAGCGTATACACAGAAACGGAATCACAGACGTGTGTTTCTCAGACTGACGTTACTAACCTTCTAGATATATGTAATGCTATAGTGTAATGctctcaaatgcatttattttccaatttttattttgtgttaggCTTTTAAATGCTGACCTTACTAACACTGTAATGTGAAACTGAATTATGTATGCGCCTATGAAAAGATACCCTTCCCTTCCCCcttcaaaatatatgtattctatgcttgtgtttgtgaatgTCCATGCAATCATCCTTTATTGGTGTATATGACCATAGATGGCACTAAGCTGTTGACTGTGAAAGTGCAAATCTattatataatctttttttgtACACCTGCTCATCAGTGTAACAGTGAtttagtgatttttttattgataCTGGTAAcgtgttttgtttataaatcacaaataaaattttctttcttaaatatcTGAAGGAAAAGTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132783 lncRNA upstream 97732 19978247 ~ 20014348 (+) True G106138
TU132775 lncRNA upstream 116093 19957005 ~ 19995987 (+) True G106134
TU132777 lncRNA upstream 116093 19987204 ~ 19995987 (+) False G106134
TU132698 lncRNA upstream 308605 19803171 ~ 19803475 (+) True G106071
TU132641 lncRNA upstream 523107 19588193 ~ 19588973 (+) True G106022
TU132984 lncRNA downstream 452472 20615438 ~ 20615641 (+) True G106277
TU133009 lncRNA downstream 744484 20907450 ~ 20907653 (+) True G106298
TU133024 lncRNA downstream 789256 20952222 ~ 20952712 (+) True G106310
TU133048 lncRNA downstream 857244 21020210 ~ 21022119 (+) True G106327
TU133072 lncRNA downstream 865827 21028793 ~ 21033188 (+) True G106347
AMCG00011364 mRNA upstream 116110 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011363 mRNA upstream 154446 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011361 mRNA upstream 156993 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011359 mRNA upstream 192891 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011360 mRNA upstream 202487 19902161 ~ 19909593 (+) True AMCG00011360
AMCG00011365 mRNA downstream 160084 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011373 mRNA downstream 575416 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011374 mRNA downstream 791828 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011380 mRNA downstream 964144 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011381 mRNA downstream 1064244 21227210 ~ 21236755 (+) True AMCG00011381
TU132491 other upstream 889659 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 994711 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 2324030 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 3129839 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 4128001 15963340 ~ 15984079 (+) True G105373
TU132823 other downstream 133045 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 198242 20361208 ~ 20367223 (+) True G106242
TU133378 other downstream 3178342 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 3193096 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 3585708 23748674 ~ 23753002 (+) True G106711

Expression Profile