RNA id: TU132867


Basic Information

Item Value
RNA id TU132867
length 1216
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G106183
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20071482 ~ 20115868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCTTTAGTTAACAAAACACGTTGCTGGTATTTAATGATTTcaatataaattacaatgttgtttcagtgtgaaacaTAAAATGTTCTTACATACTGGATTATTTTCCACGAATGTATGTAACTAAATTATACTGATCAAACCCACAAACACCGGGGTGAAGGAAACagacaaattacacatttctctaaaaatctatttaaaactGTCTCATTACAAGAAACATTATCTTACCTCCAAAAACTGAGATCTCATTTGATTTCCTTTCAGAGTGTCAGTCCCAGAAATACTAATCAGATCTCCATCTTGAGGTGGAAACGGAGAGTTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132842 lncRNA downstream 57208 19941029 ~ 20014274 (-) True G106163
TU132642 lncRNA downstream 482510 19588175 ~ 19588972 (-) True G106023
TU132569 lncRNA downstream 591398 19422435 ~ 19480084 (-) False G105968
TU132566 lncRNA downstream 643535 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 658467 19410368 ~ 19413015 (-) False G105970
TU132906 lncRNA upstream 101383 20217251 ~ 20217476 (-) True G106212
TU132920 lncRNA upstream 156195 20272063 ~ 20276305 (-) True G106224
TU132972 lncRNA upstream 370403 20486271 ~ 20488188 (-) True G106266
TU132985 lncRNA upstream 499570 20615438 ~ 20615642 (-) True G106278
TU133011 lncRNA upstream 796051 20911919 ~ 20912138 (-) True G106300
AMCG00011362 mRNA downstream 158577 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011356 mRNA downstream 203669 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011354 mRNA downstream 247330 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011357 mRNA downstream 312439 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011355 mRNA downstream 345117 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011366 mRNA upstream 261074 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011367 mRNA upstream 270296 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011369 mRNA upstream 318590 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011368 mRNA upstream 324606 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011370 mRNA upstream 383254 20499122 ~ 20544751 (-) True AMCG00011370
TU132729 other downstream 203580 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 658467 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 966213 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1880287 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2937448 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4896337 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6391075 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9509216 29625084 ~ 29625387 (-) True G107713

Expression Profile