RNA id: TU132868


Basic Information

Item Value
RNA id TU132868
length 947
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G106183
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20071482 ~ 20115868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTGTCAGTCCCAGTAATACTAATCAGATCCCCATCTTGAGGCGGAAACGGTGAGTTAAAAACCACGACGTCACTCTTCAGGGTGTCTGAGCTGAAACACACGTCATACTGCTGAGTAGTTTTAGAGTAAGACCAGCTCCCTTCAGGGTGTGTGGTGATCATTGGGGGGCTGTACCCGCTGAAACTGTCATCCCTCCTGTGGCATTTCACAACTATTAAACTGAGGAGACTCAGCACAAATATCACTGACACTGAGACAATGGCGATGAGCAAATAgagatttaaatttgaaaacgTTTCATCGCTTTTTGGCCGTTGCCTGTGTTCCGACTGTATTTCAGGCATATTTTCGACGACCACAACATCAAGAGTAACAGTTGATGACAAAGGTGGTTCACCGTTATCAGTAATCAAAATCACAAGAGGGTGTGGTTttatgtcattttcatttagaCGTCGTTTAGTCCTTATTTCTCCACTACTGGTACCGATTCTGAATGTGTCCGTTCCCTTGGGCTCAACAATGTGATAAGAAAGCAGCGCATTGTATCCACAATCCGCATCCACAGCCCTGATCTTCGCCACAAAGTATCCCGCTTCAGCAGAATAAGGGATGTGCTCAGTGTTACCAGAGCCGTGCTCAGAGTAGGGAGGCAGGATCCCGGGGCTGTTGTCATTCTCATCCAGGATAAAAACGCTCACAGTGACGTTGCTGCTTTGTGGAGGGACACCGGCATCAGTGGCCTGAACCTGAAACTGGAACGTTTTCACCTCCTCATAATTAAAAGTCTGCATGCTGTATATATCTCCACTGACAGAGTTCACGCTTATAATAGAATAAATATGTAGTGCCTTGGCAGAACTGTCCAATAAAGAATATGTTACTCgggcattttcatttaaatccgGATCAAAAGCAGACAAGGAATATATAATTGTTCCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132842 lncRNA downstream 57208 19941029 ~ 20014274 (-) True G106163
TU132642 lncRNA downstream 482510 19588175 ~ 19588972 (-) True G106023
TU132569 lncRNA downstream 591398 19422435 ~ 19480084 (-) False G105968
TU132566 lncRNA downstream 643535 19422435 ~ 19427947 (-) False G105968
TU132578 lncRNA downstream 658467 19410599 ~ 19413015 (-) True G105970
TU132906 lncRNA upstream 130487 20217251 ~ 20217476 (-) True G106212
TU132920 lncRNA upstream 185299 20272063 ~ 20276305 (-) True G106224
TU132972 lncRNA upstream 399507 20486271 ~ 20488188 (-) True G106266
TU132985 lncRNA upstream 528674 20615438 ~ 20615642 (-) True G106278
TU133011 lncRNA upstream 825155 20911919 ~ 20912138 (-) True G106300
AMCG00011362 mRNA downstream 158577 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011356 mRNA downstream 203669 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011354 mRNA downstream 247330 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011357 mRNA downstream 312439 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011355 mRNA downstream 345117 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011366 mRNA upstream 290178 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011367 mRNA upstream 299400 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011369 mRNA upstream 347694 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011368 mRNA upstream 353710 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011370 mRNA upstream 412358 20499122 ~ 20544751 (-) True AMCG00011370
TU132729 other downstream 203580 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 658467 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 966213 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1880287 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2966552 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4925441 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6420179 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9538320 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU173412 False 624 lncRNA 0.41 2 NC_048566.1 47821237 ~ 47822264 (+)
striped catfish (Pangasianodon hypophthalmus) TU173412 True 2537 lncRNA 0.40 2 NC_047603.1 10710656 ~ 10717614 (-)
mexican tetra (Astyanax mexicanus) TU173412 True 310 lncRNA 0.45 1 NC_035911.1 502468 ~ 502777 (+)