RNA id: TU132939


Basic Information

Item Value
RNA id TU132939
length 2312
RNA type TUCP
GC content 0.45
exon number 3
gene id G106242
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20361208 ~ 20367223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTTCATTAAAATGGAGATCAATCATTCTcaaagcaaatgtgtttaatattatattttgttacaataataacatttaaaaaatccagaatataaatgaaatggaaagaaaagaaaaacaagaacaccaGCTTGAAATTTGAACCCTGAAATGGATCCCATGAACTTTATTGAAACTGTCATTGATATCGCACCATGTTTTAAACGCACACTTGACCCTGTCcgaggtctctctctctgtactctCAATAACGGTAACGACTGAACACTGCGAGTCGAGCCTGTCCGACGTGGGACACCATAGGATGAAGGACGTGGTCTCTTATTTCAGTTAATATGCGTCACCTAATCGGCGTTTCATGTAAAAGGTAGTAGTTTCCCCAAAGCCAGCGCTCAAAGATCTTCAGCTAATCTTCCTATAACAGTGTCTCCCAGCAGTGTCCATCAGAGGCTCAAAGCACAGGGACAGACGTGGCCAACAGCTGCCTGGAAGACTCACGGGGAGAGGGCAGACAGGGACCCCTCCACTGTGAGGAAATACAGCGTCGGCAGGACGTTGGGACACAGAATACATTCACCCTGATGTCTGATGGCCTACAGGCTGGAGAGAAGAAAGCCCTGGCAGTGGACAGCAATGAACCCCCCCATTAGCCCCACCAGCATAATTACACGGTGCCCATCACTTGATTTCCCCTATTAACCGCCTTCATGCACGCTAAAGTGTGATCCCCAGTGATATTGTATCTCTGCATTAATGGCTGGAGCTGACTAAAAGCGACCGAAGACACTCTAAAGAACATAAGATATgaatatttctattttattgtgtttgctTTGCAGATACAGTGGTTGTCTTTTGATATGTCTTAATAAACCTtgacattgatttattaaaaaaaaaaaaaaaaaaaaagagatgtttAAAGTTGGTTAATAACAAAAaccacccccaaaaaacacaccGAAAAGAAGTGATGAGGTACCAGACCTGCTGAATATACTGTAAAGACGTGGAAATGAATGTGAAGGACAGTACGAGGTGTTGCGTTACTCACAGCAGCACCTTGTCATCGGATTGAAATGTGCAGACTGGAGACGCATTGGCACTTGTGGCTTTCACATGTATACACTCAGGAAAGTAAAAATGCATCACGTgcccaaaacacaaaatgtgagaTGTTATTTTTAGTCAATTCCAGCCATTGCTTCGGACACTGTGGTATCGAGTTTGGAGACAGGAGACCGATGACCTGCGCTGGTTCTGCCAACTGGAGCCTGCGACGGTCAAATCTTCAGTCTGAGCTCGCGTGTCACAGGGAACGACCAGATCTTTGGCTTTACCACTAACATTACACTAAAGGGccggaaagaaaaaaaaggagataATGAACTTATGGCTGACCAAACCGTCACCTCACATGCGTGTGGATTCACTCGATATTGTCAGTGCGAAGAGATTATATGGTAAATGCATGTAAAGAGACCATGAGTCGATACATTCTACCTGACTTTGATCCAGTGTAAATAGAAGCCTTTAGCAACTGTATCAGTGCTAAAAGGTGGAATATCAATTAAAGTAGCAGTCTTTCAACAAGCGGGAAGCTAGGAACCATCTTCACGTCAAACTCCTTGAACACAAGCGCCTGCCAGcatgtatcattttaaaacagtcacATTCACGTGGGTTTCATCAGAACATACTGTGCGCCTCTCAGTCAGTGGGATTTCTGAATCCTCGTCTCAAACACTTAATTTCTTTCACTTTATCGTTTGAATCCATCGCGGTGGTTTCCGGTTTAACTGGATCTCGCCGGGGCCGCGTCCAGCATCTCTTCCAGCGTCTCTGCCTCGGCGGTCTCcgctttcttttcctttttctcctccttttcGGCTTTAGCCTTTTTCAGAGGATGGCTGCTGCCAACGGAATCGTCCTGCAACAGTTCCTTGGCCAGGATCGAGGTCACAGCATTGCCAGCTCTTCGGTTGGCTGGAATGACAAAAAGGAAACGTCAAGAGTTGTAAAGTCGGAGGAGAAAGACAGACGGGCCCTCTTCCTGAGTGGGAGAAGACCACCGAACCTGCGTAATGGGGACCGTGGGGAGCGCGCCGAGACGAGCTGCGCTATGAGCAGCTCTTCTCCTGGAGGGTCTTGGGAATGGAAGGAGAGAAGACACTTGATATACAAACCACAGCCCACAAGCAGAGGGCCAGAGGAAGTGCGCTAATCTTATGATAAAGCTTTTAACAGAGCTTcaatggaaatattttaataaaatgcccCCTCTGAATTTCCCTGAGGGAgatactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132784 lncRNA upstream 198242 20115971 ~ 20162966 (+) False G106139
TU132783 lncRNA upstream 346860 19978247 ~ 20014348 (+) True G106138
TU132775 lncRNA upstream 365221 19957005 ~ 19995987 (+) True G106134
TU132777 lncRNA upstream 365221 19987204 ~ 19995987 (+) False G106134
TU132698 lncRNA upstream 557733 19803171 ~ 19803475 (+) True G106071
TU132984 lncRNA downstream 248215 20615438 ~ 20615641 (+) True G106277
TU133009 lncRNA downstream 540227 20907450 ~ 20907653 (+) True G106298
TU133024 lncRNA downstream 584999 20952222 ~ 20952712 (+) True G106310
TU133048 lncRNA downstream 652987 21020210 ~ 21022119 (+) True G106327
TU133072 lncRNA downstream 661570 21028793 ~ 21033188 (+) True G106347
AMCG00011365 mRNA upstream 21883 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011364 mRNA upstream 365238 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011363 mRNA upstream 403574 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011361 mRNA upstream 406121 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011359 mRNA upstream 442019 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011373 mRNA downstream 371159 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011374 mRNA downstream 587571 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011380 mRNA downstream 759887 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011381 mRNA downstream 859987 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011387 mRNA downstream 952201 21319424 ~ 21385863 (+) True AMCG00011387
TU132823 other upstream 22121 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 198242 20095229 ~ 20162966 (+) False G106139
TU132789 other upstream 198242 20112080 ~ 20162966 (+) True G106139
TU132801 other upstream 198242 20118575 ~ 20162966 (+) False G106139
TU132491 other upstream 1138787 19222055 ~ 19222421 (+) True G105916
TU133378 other downstream 2974085 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 2988839 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 3381451 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 5988944 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 6403215 26770438 ~ 26771214 (+) True G107202

Expression Profile