RNA id: TU132972


Basic Information

Item Value
RNA id TU132972
length 1505
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G106266
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20486271 ~ 20488188 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACATTCTGCACAGCCCTGAAATTGTTCCAGCCACTTTGTTTCAAATGGAGAGCTGctgtgaaaacagaaaaaaagaaaaagaaatccgTCACATGCTTTCACACATCGGTGTTCCTGGAAGGCTCCCTCGGTTCAGATGCACAATTCAGGTTTCTCTGGGTCTGAGTGAGCAGGTTAGCCAGTGATCTGCAAAACCAGGGGACAAGGCAGAGGGTATACACCAATCTGTTTGTTCCAGCTGCTGACATCCACCAAAACCCAGAGCCTCCAAGAGTGAAACGCATTGCATGGCCCTGGACAGCACTACAGCAGGAGAGGAATGAAGCCCAGCCACTCCAGATGAACATGGAAATCCATGTGTTGCAGCCATGAGCTCAGTCTGCGCCACGGAGAGCGTGTGAAGGGGATATTCCCACACAGGGAAGGCAGCACAGCAGTTTGATTTCTCTGATTCATGTTCTGCTTTCAAAAGCCAAGCCTGCAATCTGCGGCAATCGGGTTTGTTTCCCTTGGGATTAAGTTGTCACAGATTCCCTGGAGGGGCAACGGAGACGCATGCACTTCTGTGCCTTATTTACCCCAGAGAAGCTGCTGGGGAATGAGCAATAGTGAAAGTTTAAAGTTATAACTTAAACATATGTAGCATTTGGAGACGGGTATGGTTTGCAGGAAAGTTGTACTTTGCGGGTTTCCATTGCCCATAAACGCCAGTGTGTGTACCGCAAGGACAATGTGGGATATCAAGATGCTCATCCGAGGATTTAAAATACTGCGTTACTAACGGGGAGGTAGGATTTACAGCAGAAACGGACTGACTTGCTCTAGTTATTATTAGAGATGCGTTACATTATTTGACGACTGGGACACTATAGACCGGCTGCCCTTTGAATAATGCAAACAAGATTTCACCTCCGTCTACCTCACCTACTGCCTGGATCTGATATCTTCATAGTCTGCGCAGCACTGCAAttggAAATTGATTAACAGAAGAGGAGGCATGTTAAGACAAATGTTAATAAACTCTACTGCTGCCTCAAGCTTTGAACTCATGGCCCACACCAATGCACCGTCCTTAAATATATCCCAGGGACCCATCAGTGTGGCAGGCTTCCTCAGACCAACTGGCAGAGGATTGAGAGAAGGAGAATTAAACAAACCCGATTTAGTGACCTATGTGATtatattctttgttttatttctgctggTTTTGGTAATTGTGCTTTTTATCAATTGCCAGCTGAGGAATTCCTTCTTTGCGACCATGCCTTATGACAGGTCGTTAAGAGAAGCAAGGAGCTCCTGGAAAAGTGCAAGACTGTGAAATACACTCAGTGGATTAAACAGAGATCCTGGATGTTTCCTCTTCTGTAAAGGCTCAGCGGACCTGTACACTTGTATACTTGGGGTAATTATCATCACATGggtaaaatgtttgttcatcTTGTATGAGTTGCAGTATGCTCTGCAATGTacagtgctttattttcagATCTGGTTTAATGT

Function

GO: NA

KEGG:

id description
ko04979 Cholesterol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132920 lncRNA downstream 209966 20272063 ~ 20276305 (-) True G106224
TU132906 lncRNA downstream 268795 20217251 ~ 20217476 (-) True G106212
TU132867 lncRNA downstream 370403 20071482 ~ 20115868 (-) True G106183
TU132985 lncRNA upstream 127250 20615438 ~ 20615642 (-) True G106278
TU133011 lncRNA upstream 423731 20911919 ~ 20912138 (-) True G106300
TU133063 lncRNA upstream 463572 20951760 ~ 20952855 (-) True G106340
TU133185 lncRNA upstream 1307437 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 1386624 21874812 ~ 21875126 (-) True G106453
AMCG00011368 mRNA downstream 9190 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011369 mRNA downstream 47352 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011367 mRNA downstream 95526 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011366 mRNA downstream 101622 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011362 mRNA downstream 573366 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011370 mRNA upstream 10934 20499122 ~ 20544751 (-) True AMCG00011370
AMCG00011371 mRNA upstream 157315 20645503 ~ 20660607 (-) True AMCG00011371
AMCG00011372 mRNA upstream 225750 20713938 ~ 20728141 (-) True AMCG00011372
AMCG00011375 mRNA upstream 404402 20892590 ~ 20907111 (-) True AMCG00011375
AMCG00011376 mRNA upstream 470676 20958864 ~ 20966129 (-) True AMCG00011376
TU132729 other downstream 618369 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1073256 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1381002 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2295076 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2565128 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4524017 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6018755 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9136896 29625084 ~ 29625387 (-) True G107713

Expression Profile