RNA id: TU133087



Basic Information


Item Value
RNA id TU133087
length 733
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G106361
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21131698 ~ 21132430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTAGATAAACAAGGCCCTTTTTGTTGGCCAATAACTTTATTCAGTGTCAAGTACATCAACTTAAATCTATCAATAAAGGACAACAAATCCCCAATTCTATCAAAAGCTAAAAAGTATCATCAAAATCCTCATCTATctgaaacaaagagaaaagagaaggcTGTGGCATCTTCGGCGCAGGTGTCTTAATATGAATATTGGGGCATGCAAATGAAGGCCGAGGCTGCTGGCAAACTGGAGACCCAGAGGCTTCCGATTTCACTTCTGCGCCATCAGCAGTGCTTTCTAGCTCATCACAACCATGTATTCCTTTACAAAAAGCAAGGGATGATATATTTCTAATTGCAGTTTCAGTACGTTTTCTTAGGGAACCTGGTTTGCCTGGCACAGATGCGGTTTTACAGACCTTGTTTGCAAAGCTGGGCTCTTGGTCTTGAAcaatagaattaaaaacatacaatgaaTCCGGTACCTCATCCTGGGTGTTAATATTCTGCTTTCCATTCTGCTGCTGAAACCCAGTTCCTTCTGGTTCTTCCTCCTCCTTTGAGGATACAGAAAGAAACTTGTCCCATTTGGAAGCCTTCAGCCCAGGGTTCTGTGCACCGAATCTGGAATGCGATGAAGCTTTGGCAGCAGGAAAAGCTTGGCTGGTATTTGGAGCTGCGGTAGGTATGAGTGACGATCCCAAGGTTCTTGAATTTCTATTCGTCAATAGTGTCTCCCCATTCT

Function


GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04115 p53 signaling pathway

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133072 lncRNA upstream 98510 21028793 ~ 21033188 (+) True G106347
TU133048 lncRNA upstream 109579 21020210 ~ 21022119 (+) True G106327
TU133024 lncRNA upstream 178986 20952222 ~ 20952712 (+) True G106310
TU133009 lncRNA upstream 224045 20907450 ~ 20907653 (+) True G106298
TU132984 lncRNA upstream 516057 20615438 ~ 20615641 (+) True G106277
TU133088 lncRNA downstream 1825 21134255 ~ 21134613 (+) True G106362
TU133122 lncRNA downstream 83191 21215621 ~ 21241493 (+) True G106391
TU133180 lncRNA downstream 794469 21926899 ~ 21928577 (+) True G106443
TU133192 lncRNA downstream 800174 21932604 ~ 22062654 (+) True G106455
TU133195 lncRNA downstream 957627 22090057 ~ 22090265 (+) True G106457
AMCG00011380 mRNA upstream 163 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011374 mRNA upstream 173251 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011373 mRNA upstream 392674 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011365 mRNA upstream 792373 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011364 mRNA upstream 1135728 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011381 mRNA downstream 94780 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011387 mRNA downstream 186994 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011388 mRNA downstream 660098 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011390 mRNA downstream 736358 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011389 mRNA downstream 791529 21923959 ~ 21924258 (+) True AMCG00011389
TU132939 other upstream 764475 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 792611 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 968732 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 2208878 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 2223632 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 2616244 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 5223737 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 5638008 26770438 ~ 26771214 (+) True G107202

Expression Profile