RNA id: TU133122


Basic Information

Item Value
RNA id TU133122
length 1406
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G106391
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21215621 ~ 21241493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCTCTGAGGAATGGCCGCAGATCGGAAGTCAACgttccctggactaggataaccccgGACAAGGATaacccctggactaggataacccagcgccgtcagtgcaggatggtggatcctccgCAGGAGACGAGCTCGGGAAGAAAaaagtcaccgacacaatgccagatcgtttgtcttcagtttatttttgcaacaccacacagttttatacatgtcagaagtcAGAGTTCCGGGGCAGGACATATCATATCacagatctagttgctaggcAAACATGAAATGTGTCCAATATTATAACCCCTAACACACTCAAGAGTTTCGGTTGACATGCCTGCACGGTTTGCCTAGCAGTAGATGATGTAGGACTCTtatcttatttctggtttgtctgaagagcagcatgtatattgtttatgttgtcatcTCTGAGCTGttccttaaaatataatataaatatagggagattgtggtttgacatttcTAAGATAGAGTCGAGGGAAAAGCCGTGAGTTCAAGTGTCCagactttcacagaaatagttatgcgcgagtatgttatttatgttatttctgcaataatgacaAGTTTCCGCCCCCCTGCCACggcaacatttccagtgagatatgtcAATGTCAAATCTGCAGCGTCTGTTCTAATCTAATCCTTCAatcagaatacaatacaatgagttacatggttacagtaggttaaatgATCAGTATGCCTACCTAATATCAGAACAAAGCTTAATAATTCCTAAGAgtagaatatgttatataaaaatccttgtactctgttctcccaacatgcagagtattatacagtgggtatgtacaatacatagggggcaattttaccccaacaagTATCCTGGTAAAACCATATTCCGGAAGCAAAAGAGAATCACACATTAAGTATAATAAGAATTTTACAAGTcagcttttttaatatatgtaaataaattatatatgtctaaaattgcaaaaaaaaataaaagtccaACGGGGGTGAATACATCCTATAgcaattgtatatatatgtatatgtatgttaatGCCcccaaaatacatatacacatatatacatacacatatatgcaGATACAGTGCAAAACTACTGCTTTAACTCGATTAACTTGAGCTACAAATGTCTATGCacttttaacattaaaatatatttaataaatagataaatgatTGCTCTTTTCATGAATTGTCAATCAAGCTGGATAACTTGcttctaaattattttgtactatTCAAGATTTGCGTCATAGCTCCATTACAAATCTCTTCAAGAGCCTTGAGAGATTAAATGTGAGTTTGATCTTCATAGCAAAGAGGCGATCAATCAAATTAAGTTTAACATACAGAAGAATTTCTCAAACTCCCCGGAATGACTCAT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133088 lncRNA upstream 81008 21134255 ~ 21134613 (+) True G106362
TU133087 lncRNA upstream 83191 21131698 ~ 21132430 (+) True G106361
TU133072 lncRNA upstream 182433 21028793 ~ 21033188 (+) True G106347
TU133048 lncRNA upstream 193502 21020210 ~ 21022119 (+) True G106327
TU133024 lncRNA upstream 262909 20952222 ~ 20952712 (+) True G106310
TU133180 lncRNA downstream 685406 21926899 ~ 21928577 (+) True G106443
TU133192 lncRNA downstream 691111 21932604 ~ 22062654 (+) True G106455
TU133195 lncRNA downstream 848564 22090057 ~ 22090265 (+) True G106457
TU133202 lncRNA downstream 1070221 22311714 ~ 22311963 (+) True G106464
TU133216 lncRNA downstream 1301786 22543279 ~ 22544072 (+) True G106478
AMCG00011380 mRNA upstream 84086 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011374 mRNA upstream 257174 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011373 mRNA upstream 476597 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011365 mRNA upstream 876296 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011364 mRNA upstream 1219651 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011387 mRNA downstream 77931 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011388 mRNA downstream 551035 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011390 mRNA downstream 627295 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011389 mRNA downstream 682466 21923959 ~ 21924258 (+) True AMCG00011389
AMCG00011392 mRNA downstream 1262479 22503972 ~ 22506745 (+) True AMCG00011392
TU132939 other upstream 848398 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 876534 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 1052655 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 2099815 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 2114569 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 2507181 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 5114674 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 5528945 26770438 ~ 26771214 (+) True G107202

Expression Profile