RNA id: TU133180


Basic Information

Item Value
RNA id TU133180
length 1679
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G106443
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21926899 ~ 21928577 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAGCATAAAATATGGGTTGTATATCAGTATATGTTCCAACAGtctaaaaagagagaaaaaaaggttaCTACATTTGTGGTGTAGCCCAAGCTATTACCATATATTATGGATTATGTAAAATCGGTCTTGTGTGTTTAAAGATGGTTCTGGCTATTAGTTTAAGTCTAGAATGCCCTGTTCATTATAAAGACAATCAATTTGAATAAGCCAATTAAAAGTCCAGTCATGAGGATATAAAAAGCACATTCTTCTATTTTTTAAGCCATTTAATGGCTAtgataaaatacagcaaaaactGTAATCCATTGTAATTGCATTTAAGCCTAGTCCATTTCTGAGCTGCTCGATTGCCTTTTCTTAAATTCCAATTCTCTGTGGGTTGTAATGCTGGCATTGCCCATCTCAATCGCAGGAGGCCTACAACCGCTCACATCAACTGGCTGTCTACAGTGTCCTTGAAAGTAACTTAAATTCATTTGGGACAGTTTTGAGAATAAGTCGTCATCAGACACACGATTTAGAATGTACACAATTAGGTAATTAAGTGAAGCCTGgagcatttttttatattatataattagtaCATGTTGGAGACTTGAAGACATTTAGTGGGAAGATGTATTCAGGGAATACTGGTTATTTGGAGACTCTTACTcatcaaaataagtaattgtaaGGGCAAGCCAGACACGTTTCACAACCTGGTATATATTCTATCTTTAAACTGTGAATCGAATAGTTTTCAAAGCTCTTATCATGTTAAGAagtcaaattatttcaaattggtGCATTATTTCCTGCATTTGCACCAGGTTGTGTCTTTTATTCGAACAGTAAACACACATTGAACAAAGCCAGTATAATGCACTATATGAAGGGAAATTATAAGGTGTATTGTCTATTTATATTATCTagaatcatttttatttaatctgtctgAAGAGAATTCCTAGATGTTGACcatgcattgaaaaaaaatgaaagctgcTGCAGTATTGAGATGAAGATGGAACTTGCTTTGACAATGAAGGATGTGTAGTTGAATTGGcccaaatgtttaattgttgatGATCTGCTTTAATTCTCATTTTGTTgtataaagttaaaaatatttatgttttgcatttctcttgtggatatatttatatatctgtaCACCATTTGAAAACCTTAGGATTAAAAATGGCCTTTTACTCTTCTAGATGTTCACAATTatgctgtttaatttaatttcacttgcTCAATTGTTGCTTTAGCAAAGCGAACAAATCATTTTTCATCACTCCACTTCAGAGCTCCCCTTCAATACCTCTTGACTCCCCTCTTACCTTATCTGAACTGCAGGGCTCAGGAAATAGGTTTGATACTGTGTCTTTAAAGTTGACATCACTGATAAACAGCCTGAGAAGTGAAGGGATGTGCTTAAAATGGCAATTTGAAAAGGACAATAAAGGAACTGAGAGCTTTATTTTGAGTTTTGCCTCCCTTTTACCATCTCCTTCTATTTACCTTATAATCAACTTGACCTAAAGCTAAACCTGTAGCCTCCAAGCTTGAACATCTTGTCTTCAAATCCTTGCTCTGTGAATGACTCTGGAGTAAGATGCTCTACCTCTAAGTGTTTCAGTATAATATATCAGCAAGACAGAATTCCAGATAATGCAAGATGCAGGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133122 lncRNA upstream 685406 21215621 ~ 21241493 (+) True G106391
TU133088 lncRNA upstream 792286 21134255 ~ 21134613 (+) True G106362
TU133087 lncRNA upstream 794469 21131698 ~ 21132430 (+) True G106361
TU133072 lncRNA upstream 893711 21028793 ~ 21033188 (+) True G106347
TU133048 lncRNA upstream 904780 21020210 ~ 21022119 (+) True G106327
TU133192 lncRNA downstream 4027 21932604 ~ 22062654 (+) True G106455
TU133195 lncRNA downstream 161480 22090057 ~ 22090265 (+) True G106457
TU133202 lncRNA downstream 383137 22311714 ~ 22311963 (+) True G106464
TU133216 lncRNA downstream 614702 22543279 ~ 22544072 (+) True G106478
TU133215 lncRNA downstream 615607 22544184 ~ 22544435 (+) True G106477
AMCG00011389 mRNA upstream 2641 21923959 ~ 21924258 (+) True AMCG00011389
AMCG00011390 mRNA upstream 50566 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011388 mRNA upstream 128936 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011387 mRNA upstream 541036 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011381 mRNA upstream 690144 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011392 mRNA downstream 575395 22503972 ~ 22506745 (+) True AMCG00011392
AMCG00011394 mRNA downstream 671341 22599918 ~ 22603575 (+) True AMCG00011394
AMCG00011395 mRNA downstream 675439 22604016 ~ 22630597 (+) True AMCG00011395
AMCG00011397 mRNA downstream 717455 22646032 ~ 22650834 (+) True AMCG00011397
AMCG00011396 mRNA downstream 741164 22669741 ~ 22691805 (+) True AMCG00011396
TU132939 other upstream 1559676 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 1587812 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 1763933 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 1412731 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 1427485 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 1820097 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 4427590 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 4841861 26770438 ~ 26771214 (+) True G107202

Expression Profile