RNA id: TU133185


Basic Information

Item Value
RNA id TU133185
length 4195
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G106448
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21795625 ~ 21799926 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaaaattttAAGAatctttattgaaataaaatttcCTTTAATTATCAAAAGTATACAAATTTACAGGTTACattcttctgaaaataaatatcaaatcaaatggAATTAAAAAGGGGATAACTGcagctttaaatacaaaattaactcGCCCATTTTGTAACAGACATCTTGACACAGGGGTCGCATTTATCAAGTTTAACAGTTGAAAGCTACCTCCCTCAGCAAAGACCTTTTACTATAGATAAACTAAACTGCTGTATAAAAACTCGAATTGCCTTCACATGCAAAATATCCTGGCAGCATGCACAGTAAAGTCGTAAAGCTTTTATCATACTGTATCCAAGCTTCAATGCATCCCTTGCTTCTCCAATTGTGTCTTTCCTTTACGTACTTTAATTATTGGCAATTTATTgtgaattaaacaattttataaGAGATGCACACTTCTTAATTGTGTATAGTTGATTATTAAAAGAGCAAGAATCTTCATAAGTAAATTCTATGATTTTGTGTGGGCAGAATTGTTCTACACAGAAACATAAGGGCACCTgcttattgttattttacagacactttaccttttaagtttttaatataCATCAGATAAAACCCAAAGCTGGCATATATCTATATGCACAAATCAGATTGATTTCATCTGTTGTGCGTCACAgatctaacaaaacaaaacaaatgtggggAAACACGAGTCATGAAAATTAATAGCAAAAGTAATTTCTAGGGATCAGCCTTCACTTGgtacacaattaaacaaacatcatCATGAAAGTCTCATGCTAACTTATTAAATCTGCAaaagaattttaattttaatatacgAGAATTTTAAATGAAGTGAAATTATGAAACGTatgaagaaaacagaaaacattaaaaacaaattttgtattaacaatCTATTAATTACAGGTTGAAATAGTGTATTCATCTTACTGAAGACTTCTAAATGTATATAGGTAAGGTAAACAATAACTTGTGGCACCTTAATACCATGTGGAGGGTGTAATTAAAATGCGACCCCTGGTTTAATCAAACGCAAACTAGTAAAACAGAACATTCAGTATcaacatatatacaattttaaagtcAGCCTGCCTTCAACTGTGTCCTAGAAAAGTAATTCAGCAAATCTTTTTGGTTTTTATCAAGGCTACAGTAAACTTCATCTGCTCCAGACTTGTCCATTTTCTTGATGTGAGTAAAGGTTAATACTAAACCAGACCTCACAACCTTTCTTTTTATAGGTGGTATACTAAGGTCTTGACATTGAAACCTCATAATATGCAGGTATTTAACATCCCCAGGTATGTAAAAAAAGGCACTTCGGCAATTAAGTTGGGGATGGAATTACCTGTTATTAGTCTTTGTTACTGAAACTAATTTTTAATTGGCTTGTCAGAAGGCTGAGAGGTAGGGTTTAAAACCTTTTTAGTGCATTACAGTGCAAAAGACATTCCTCCATATTTAagtgtgtgggttttttttctccagtgtcCACAGGAGAGATTTCAAATCTTTCGAAAAAGAAAAGTTTCATGTTTAGTTAACATAAgattttaatgtgaaattgcCTTAAAATTCTTCCAAGTGTGCCTTACAAAGAAATAAGTCAAGCCATTGTTCGGTCTCAGATAAGAGTGAGCTATGAGACCAAATATCACTGACCCTCAACATTTGACACATGAATATGGAGGATGCATATCACCATTTTGTCCTTCATAGCTGAAGCAATGCCGGTGCAGAAAACCCAGAGCAACTAAAAACACCTCCTTcatttaaaaggttaaaaaaaaaaaacacacaaacaaaatcctcaaatatttgttttggcttcaataagaaaaataaaaataaaagacaaacagacaaaaaagtgTACTAAAATGACTAACTCTTTAGTATAGGCAAAACATTTCTGGGATTTCTGGGGTAGAAGTCCATTCCTACCACACCTCATTAGTCCACATAATGTTCCTGTCCAACCCTGCTGTGTTTAGGAAGTCATCTCCTACCTGTTTGTTGCTGTATTTCGGGGGGTTGGCCTTGTAGCTGTAATCCGAATACTGGTCCGAACCCATGGAATTGTTGTCTCCAGTCCCGACAAAAGTGTTGGTTGCTGGGAGGTCTTGGACAGCTTGATGCTTCTTAGATGCAGAAGGAGACTGGGGCTGGAGCTGGATGGAGGGCAGGGGGGAATTGGAACGGTAGTGGCGGCCAAGGTCTGGGCTACCAGGCGGGTAATTAAGGGGTAAGTGGATTCTGGGACTGTCATTGACGCCATCATTGATGAGGTTGAATTTTAAACCCTTCGGGTGGCTGGCTTCCTCATCCTCCTCTAAAGTCTTGGCAGGCTTGGgggcttttccttttttcccctttttcccTTTGTTACTCTTCGGGCCCTGTTTGGGTGCATATAGATCCTTGGTCTCCTTCTTCCCTGCCTGGTAACCACTCTTAGCCTCTTTCTGCAAGTGGTAACGAATGACCACAACAATAACGATGACCAGGATGACCCCAGTGATCCCCGCAAGACTGCCATAGAGGATGTTGCTTCGCTGGGTGGACTGGCTAGAATCAGGATCCCCAGCAATATCTCGGTCTAAGGGAGTGTAGAGACTGTGCCCCACCAGCGACTCCACTAATGTGATGTTGTTGATGGTCTCGTTCACAAAAATGTGCACCAAGGCTGTGGTATGTCTAGGGGGCTTCCCTTTGTCGCTCACTCTTACAACTAACCTATGAAGTCCATTGTGTTTCCGAAGAAACTCTTTAGCTAAAGTGATCTCTCCATCAGAAGGAGAAATGCGGAAAAGGTCATGTGGATTGCCACCTGTGATACTGAACACCAGCTCCGCATTTGGGCCAGTGTCCATATCCTCAGCCTCCACTCTCTCAACCATTGAATCAGGGTTGGTTAGAGGGGAAAGATGCTTGTAAGAGGAATTTGAAGGTGTACGTGCTTTCCTTCTCCCGGTCAAAAGAGATGCTGGAGTAAATTGTCCCCGTGCCGTTCTGAATGACAAATTTACCATTATCTGGCTCAACAGAAATATGCACTCGCGCATTCTCGCCTTTGTCAGCGTCCAGGACTGTCACCATTCCGACCGGACTGAGAGGGGGCATGTTTTCTGACACAGAAAAGCTGTAGCCGTTCAGCATGaatttggggtcattgtcattgCGGTCCAGCACCTTGATTACTACTGTAGCCGTTCCTCGAAGGCTGGGGACCCCTTTGTCGGCAGCTGCCACGTTGAATTCATAGCGTTCCCTATGTTCGCGGTCCAGCTGGTTGCGCACCCTCACTTCCCCCGTGTTTGAGTTTATTTCAAAGAGACCTTTCGTGGAGGAGTCAAGGATAATGCTGTATGTGAGCTCAGCATTAGTGCCGCTATCTGCATCTGTAGCCACTACATCCACGACCTTGTCCCCTGGCTGATTTTCTTCTGCAAAATCCACTTCGAAGTGGCTCGGAGAAAAGATGGGCGAGTTATCATTTATATCTGTAACCTGGACCTTCAAAGAGTTGGTACTAGAGAGAGCTGGATTGCCCGAATCCACAGCCACGATCTCAATCCGATACTCCTTGACCCGTTCATAATCCAATAGAGTTGTGGTCTGGAGGAagtatttcttcttcttgtcaCTTGAAGATTCACTCGCTGGCCTAAGCTGAAAAGGGACGTCCCCAGCGACCACACAAGTCACCACGGCATTCTCCCCTTCATCACGGTCTGAGACTTGGACCAGGGCTACTGGGGTTCCAATGGGCATGTCCTCCGAAATATTGGCCACCCCATCTTGATGGATTACTAGCCCAATTCCACGGATCTCAATGGTGGGAGCATTATCGTTCTGGTCTTTCACGTTGATGGAAACGAAGACCTTTGAACTCTTGGGTGTGGGTCCTTTGTCTCGGGCAATCACATAAAATTTTAGCACATTTACTTCTTCTCGGTCTACAAGTCCCTTCACATAGATCACCCCACTAGAACGATCAATCCGCAGCAACCTCTGAACAACATCAGAGGGTTGATGTAAAGTGTACTCAATCTCTCCATTGGGCCCCATGTCTGAGTCATTGGCTTtcacctgcaaaaaaaaaaaaaggtagatTTATATccaaattcaaattacattataatgtaaGATTCATTTATCTAGATCAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133063 lncRNA downstream 842770 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 883487 20911919 ~ 20912138 (-) True G106300
TU132985 lncRNA downstream 1179983 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 1307437 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 1519320 20272063 ~ 20276305 (-) True G106224
TU133190 lncRNA upstream 74886 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 126927 21926853 ~ 21928367 (-) True G106454
TU133220 lncRNA upstream 742723 22542649 ~ 22543019 (-) False AMCG00011391
TU133248 lncRNA upstream 850574 22650500 ~ 22653658 (-) True G106509
TU133268 lncRNA upstream 896661 22696587 ~ 22696846 (-) True G106527
AMCG00011386 mRNA downstream 580995 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 641823 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011383 mRNA downstream 720849 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011385 mRNA downstream 747376 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011384 mRNA downstream 773688 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011391 mRNA upstream 742913 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011393 mRNA upstream 764173 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011400 mRNA upstream 894215 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011398 mRNA upstream 938752 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 943504 22743430 ~ 22753092 (-) False AMCG00011399
TU132729 other downstream 1927723 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 2382610 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 2690356 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 3604430 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 1253390 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 3212279 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 4707017 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 7825158 29625084 ~ 29625387 (-) True G107713

Expression Profile