RNA id: TU133216



Basic Information


Item Value
RNA id TU133216
length 794
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G106478
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22543279 ~ 22544072 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTAAGGTTTAagactgcttttatttaaaaggaagcCATTATTTAGTATTCTGCCTTGAAGTAAAAGGGGGGGGAGAGCTGGGGGGACAAAAAAATGTAGAGGGTTCTGGATGTCATAGACATTACTACAACTATGCCTTGAATGTAAATAGATGAGTTTAGACATtaggaaaggaaacaaagtatgaaaacaaattatttaatggcTTAAGGAGGAAGGGGGGGAAACAAGAACTACCATTTCAGTCCATTTCAACTACTGAACAAAAATCTATTGAAAGAGACTGCTCGCTTTTACAAGCTTTCTTAAAACAGGTTTATGAAGGAAACCAGAAGAAAAAGgggatggggaaaaaaaaaaaaaaaaaggaaaagttgcTCTAGGCCAGATGTCTCCAGTAGTGTTTTACTCTGAGAAGATGACAGGTTTGTAGTTGTTCATCCGGTCTGTGCCACCACTAGTGTTTACCACTGCAAAAATTGCTTGTAGCCAATGAGTCACTCTATACTTCGGACTGCCTGAGGATAAAGTCCCTCTCGCAGGCAGTGTAAACAGTTCAGCCTCGAAGACCATGTTTTAGTAATCAAAcgttgagggaaaaaaaaaaaaatatattaaaaagacacTCCCTagctcctctccctctcattaGGATACGGAGGAGATAGGGTTAAGAGGAGAGCCCATCTGTGTCAGTACTTTATCAAGCCACTGGAGAGGGCCGTGCAAGTGAACTTCTATCCAACAGGGGGTGCTGGTGACGTCTTGCCGGTGATACTCCGCCCCCCAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133202 lncRNA upstream 231316 22311714 ~ 22311963 (+) True G106464
TU133195 lncRNA upstream 453014 22090057 ~ 22090265 (+) True G106457
TU133192 lncRNA upstream 480625 21932604 ~ 22062654 (+) True G106455
TU133180 lncRNA upstream 614702 21926899 ~ 21928577 (+) True G106443
TU133122 lncRNA upstream 1301786 21215621 ~ 21241493 (+) True G106391
TU133215 lncRNA downstream 112 22544184 ~ 22544435 (+) True G106477
TU133217 lncRNA downstream 3092 22547164 ~ 22547407 (+) True G106479
TU133219 lncRNA downstream 10187 22554259 ~ 22554490 (+) True G106481
TU133223 lncRNA downstream 20027 22564099 ~ 22567261 (+) True G106485
TU133254 lncRNA downstream 148665 22692737 ~ 22694844 (+) True G106513
AMCG00011392 mRNA upstream 36534 22503972 ~ 22506745 (+) True AMCG00011392
AMCG00011389 mRNA upstream 619021 21923959 ~ 21924258 (+) True AMCG00011389
AMCG00011390 mRNA upstream 666946 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011388 mRNA upstream 745316 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011387 mRNA upstream 1157416 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011394 mRNA downstream 55846 22599918 ~ 22603575 (+) True AMCG00011394
AMCG00011395 mRNA downstream 59944 22604016 ~ 22630597 (+) True AMCG00011395
AMCG00011397 mRNA downstream 101960 22646032 ~ 22650834 (+) True AMCG00011397
AMCG00011396 mRNA downstream 125669 22669741 ~ 22691805 (+) True AMCG00011396
AMCG00011404 mRNA downstream 200449 22744521 ~ 22749846 (+) True AMCG00011404
TU132939 other upstream 2176056 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 2204192 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 2380313 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 797236 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 811990 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 1204602 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 3812095 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 4226366 26770438 ~ 26771214 (+) True G107202

Expression Profile