RNA id: TU133268


Basic Information

Item Value
RNA id TU133268
length 260
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G106527
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22696587 ~ 22696846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTGACACCAAACATTTAGTTTCAGTTGAGAGCTGGCCTGTGACAAGCTCTGTGAACATGGTGTCTTTACAATTTGTAGTGAAAATATTTCTGAGTTTTTTTGCTCTCAGCTGGACTGGTCTGGTTATCAAAGGGGAATCATGTAAAggtaagagagaaaaaaatagagGAGAGAGGCTGGTGTTCATCTTAAATCCCTTAAAAAGACACTTATATTTTGtcctttatatatttcatttgtgaaaCCACCTCAGCTTAT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133248 lncRNA downstream 42929 22650500 ~ 22653658 (-) True G106509
TU133220 lncRNA downstream 153568 22542649 ~ 22543019 (-) False AMCG00011391
TU133191 lncRNA downstream 768220 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 821461 21874812 ~ 21875126 (-) True G106453
TU133185 lncRNA downstream 896661 21795625 ~ 21799926 (-) True G106448
TU133286 lncRNA upstream 53636 22750482 ~ 22753616 (-) True AMCG00011399
TU133292 lncRNA upstream 62688 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 165762 22862608 ~ 22862952 (-) True G106587
TU133364 lncRNA upstream 397445 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 479634 23176480 ~ 23176756 (-) True G106603
AMCG00011400 mRNA downstream 1760 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011393 mRNA downstream 95804 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011391 mRNA downstream 142450 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011386 mRNA downstream 1481957 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 1542785 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011398 mRNA upstream 41832 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 46584 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011401 mRNA upstream 83841 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011408 mRNA upstream 242894 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011409 mRNA upstream 356467 23053313 ~ 23059457 (-) False AMCG00011409
TU132729 other downstream 2828685 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3283572 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3591318 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4505392 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 356470 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2315359 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3810097 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6928238 29625084 ~ 29625387 (-) True G107713

Expression Profile