RNA id: TU133348


Basic Information

Item Value
RNA id TU133348
length 345
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G106587
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22862608 ~ 22862952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagcccgagtccaagatcttttaaagattttatggatgattgtttttaaaaaagattttaaaaatgaatcttaattgtttttaaagatttagttgcttttaaaccacattgtttagggtttttggtatagttttgttatattcttttgtcaaatacattgaccgttttggatttaattttaaatgcattggaccttttttgtttgttttttatttcttccttttaattgttttttttattttgtccaatgcattttcagttattttcaatgtatttgacctttttgttggtgagcagtttttgcttttatcacgtttgttttgttgttttgggcacgtttatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133292 lncRNA downstream 101292 22759534 ~ 22761316 (-) True G106547
TU133286 lncRNA downstream 108992 22750482 ~ 22753616 (-) True AMCG00011399
TU133268 lncRNA downstream 165762 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 208950 22650500 ~ 22653658 (-) True G106509
TU133220 lncRNA downstream 319589 22542649 ~ 22543019 (-) False AMCG00011391
TU133364 lncRNA upstream 231339 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 313528 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 313905 23176857 ~ 23177129 (-) True G106604
TU133370 lncRNA upstream 314276 23177228 ~ 23177579 (-) True G106606
TU133416 lncRNA upstream 533561 23396513 ~ 23399092 (-) False AMCG00011414
AMCG00011401 mRNA downstream 72381 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011399 mRNA downstream 109516 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011398 mRNA downstream 119533 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011400 mRNA downstream 167781 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011393 mRNA downstream 261825 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011408 mRNA upstream 76788 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011409 mRNA upstream 190361 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011412 mRNA upstream 478048 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 487957 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011414 mRNA upstream 530152 23393104 ~ 23489642 (-) True AMCG00011414
TU132729 other downstream 2994706 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3449593 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3757339 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4671413 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 190364 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2149253 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3643991 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6762132 29625084 ~ 29625387 (-) True G107713

Expression Profile