RNA id: TU133364


Basic Information

Item Value
RNA id TU133364
length 770
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G106601
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23094291 ~ 23097328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGCGGCGAAATTTCCAGTCCTGCTCCAAGACAGAGCTGgaaacagcacagtggagcaATTCCTCGGAGAGCTGAGGTGGTTCCTTCATCGTGGCAAAGGCATTTCTTCACAACATCAAGATGCTTCACTTTCACCAGAAAAAACTCTGCAAGGTGATCAATCACAAAAGTGACGGACATCACACACAAAGCAATTTCATGAACAATTAGTTCAGCTCAGTAGCTACTGCAGTCCTGTCAATATGCAGTTGACGGCAGAGACTGTGACTGCTTCCTCGCTCCACTGCGGCGCTCCAGAAATGAAGAATTAGCTGTCGATGACGAGTCCTGGGGCCTCTCCCTGATGCGGTCCTGGAACGGGCAGAGTTAATAGAAGGTTTTGGTGACTCTACATTGCGATCCTGTGGCGGCATAATGAATCTGCTCTCTCCTTTCCCAACCCCATTCTGTCATTTCTTCTGCACCCTTGTGAAATACACATCAAACTCTGCAATAAAGACTGTGTGCAGCCAGCATGGCAATGCTATTGGCAGAGCTATAATGGAGACAGAGATTTATGGCTGTGACCAGGTGTATGTTTGAGGGATTGTACCTGATCTAATAGCTTTTTGCCGAGCTGAATGAGAGGAGCTCTGAAGGTGAGTGGCAAAATGGCACTGACCTGTTATATGGCACTATCCCCTACTATATTATCGGCATCAAAGTGTATTTGcctcatttttattaaaacaaatgtgttgctCGTTTTTGTCGACTTTGTGCCTCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133348 lncRNA downstream 231339 22862608 ~ 22862952 (-) True G106587
TU133292 lncRNA downstream 332975 22759534 ~ 22761316 (-) True G106547
TU133286 lncRNA downstream 340675 22750482 ~ 22753616 (-) True AMCG00011399
TU133268 lncRNA downstream 397445 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 440633 22650500 ~ 22653658 (-) True G106509
TU133367 lncRNA upstream 79152 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 79529 23176857 ~ 23177129 (-) True G106604
TU133370 lncRNA upstream 79900 23177228 ~ 23177579 (-) True G106606
TU133416 lncRNA upstream 299185 23396513 ~ 23399092 (-) False AMCG00011414
TU133432 lncRNA upstream 420050 23517378 ~ 23517803 (-) True G106665
AMCG00011409 mRNA downstream 34834 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011408 mRNA downstream 145281 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011401 mRNA downstream 304064 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011399 mRNA downstream 341199 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011398 mRNA downstream 351216 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011412 mRNA upstream 243672 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 253581 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011414 mRNA upstream 295776 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011415 mRNA upstream 401498 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011421 mRNA upstream 421473 23518801 ~ 23561929 (-) True AMCG00011421
TU133362 other downstream 33325 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3226389 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3681276 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3989022 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4903096 18184484 ~ 18191195 (-) True AMCG00011316
TU133710 other upstream 1914877 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3409615 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6527756 29625084 ~ 29625387 (-) True G107713

Expression Profile