RNA id: TU133373


Basic Information

Item Value
RNA id TU133373
length 1904
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G106609
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23353628 ~ 23355643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATctatctgattttatttttgtatcattcttTTTTGGATGAGATTTTCTGATCTGTTGTCATCCCCAAAATAATGATCCACTGCATGGTAGCAGAATATAAATCCCCAGCTACCTGGAATGATTCATACATACAGTCACACGAGGCGACCTCTCTTTTATTTTAGCTCCATCTGCGTGCAGCATTAATACTCCTGCAAAATACATTGAAGTCTTGAAATAGGTTTTAGATTACAGCAATTCAGAAAACCTCCAATTACAGGGTGTGTAAAACCATATAAAGAGATGTGGTGTTTGTGAAGGACGCTATCCAAGCTTCACGTCCTCTGTGAAATGTATACCATATGTTTcctatttcttttttctctccctcgcTTCTTAACCCCCTCTGTCCATTCGCCCTAGCTGCCTTTTCTCATGTTTATATCACgtgaggagagaaaaaaatccagaGGTTTTAACCAGCCTCaaactgtaaatatgtttttatttgtgtaaatgtcCCTTATTACAAGCAAAGCTTTCTGTATGGCTATGTTGACAGGTTCAGTTTTAGACCTTTCAGTGTAGaccaaaattaaaaacttgtacATCTTAATTGTTATAGAAGGCCAAATTGCAGTTCTTCCAGGGcatttgaaaaaactaaaaacacaaacaaacaaaaaaaaaaaccaaaacaaaccacaacaacaataaaaaaactaaatctgaaaaGGTATATTATTTCTACTCATACTGTATAACTTTATGAGGGTTTTGATTCAGGTTAAAACAAAAGTCAGGTTATTATTTGTAAGTTTGTAAAGGATGGGTTTGAAAAGCAGaaaaaatacacatcattTTAACAACAATCTGATATTTGTGCTTATGCTtctattttaagtgtttatttatttaatgcatgaCTTGTTCACCTCATTGTTTACTAATACCACAGAAGTAGCATACTCAAATTTTTAAATAGGCAGAATTGTATTAATGGTGTTGTAATGTTGTTAATATTTACTATGgcaggaaaaaggaaaatgtaaagatttaaaatgcatgcaaaggCTGTtggtaatttttaaatatttttttattgctgtatagattttttttagatTGCTCACACTTGTGTCAAAGGAGAGTGAACACTTAAGAGGTAGAAAAATTCTCATCCTGCGAGATTCCATCCTCATTTTGTTCATaggaaattaacttttttttatttttaaaaacactcaaCACATGCCCTTCTGGGTAACAGGAAACATAAAATGGTGAATTGACACACAGAGCAGGGCTCGAATTTAAgagctaaataaaaataaataaataaaaacccatTCTTAATGTCTGTTACCACCACCGAAaagtgcataaaacaaaaacaataaaaaagttctaaaagcaagagaaaagaaaatttATTTagaaactttattttagttttacagttGTTTCCTTATTAatgccaaattaaaattaaattcaagccctgattaagtgaaaaaaatatcaaattttgaaaaaaaaacatccacaacATAACCTTCTCAACATACATGGTCCGACAGTCCAACTTAATCCAATCCACCATCCGGCTAAACAACTACCTCTGACTTTTATTACAGGGTTAATTGGCAATAGGTTACATCTGAGAAATGAGCTACTGcttcaaacaaacaagtaaaaaagaACACATCTGGAAAATCATTTACTCAGGTTTTATGAATGATGTTTTGaagtgtgcatgtttttttttgtgattttttttttagtggtaTAGGTAGGTTGATAAACAATGAGATTAGCACCGACATTGCGTTTAATTTCTATGGGTTAGCACCTCGTCCCAATGAAGGTAATGAAGAGTCAGTCATGAGCTGAATTTAGATGACAAGGTCCTTGTCAACGTcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133371 lncRNA upstream 146151 23207246 ~ 23207477 (+) True G106607
TU133349 lncRNA upstream 418084 22929129 ~ 22935544 (+) True G106588
TU133347 lncRNA upstream 490676 22862608 ~ 22862952 (+) True G106586
TU133254 lncRNA upstream 658784 22692737 ~ 22694844 (+) True G106513
TU133223 lncRNA upstream 786367 22564099 ~ 22567261 (+) True G106485
TU133385 lncRNA downstream 1091 23356734 ~ 23361014 (+) True G106619
TU133398 lncRNA downstream 26639 23382282 ~ 23521931 (+) True G106631
TU133407 lncRNA downstream 183722 23539365 ~ 23540728 (+) True G106640
TU133503 lncRNA downstream 473646 23829289 ~ 23833300 (+) True G106718
TU133524 lncRNA downstream 486289 23841932 ~ 23844911 (+) False AMCG00011430
AMCG00011411 mRNA upstream 32247 23288041 ~ 23321381 (+) True AMCG00011411
AMCG00011410 mRNA upstream 90790 23240188 ~ 23262838 (+) True AMCG00011410
AMCG00011403 mRNA upstream 514125 22835799 ~ 22839503 (+) True AMCG00011403
AMCG00011402 mRNA upstream 518801 22819761 ~ 22834827 (+) True AMCG00011402
AMCG00011407 mRNA upstream 554835 22798038 ~ 22798793 (+) True AMCG00011407
AMCG00011417 mRNA downstream 48213 23403856 ~ 23415142 (+) True AMCG00011417
AMCG00011416 mRNA downstream 236900 23592543 ~ 23599212 (+) True AMCG00011416
AMCG00011419 mRNA downstream 267137 23622780 ~ 23623300 (+) True AMCG00011419
AMCG00011418 mRNA downstream 301027 23656670 ~ 23657442 (+) True AMCG00011418
AMCG00011420 mRNA downstream 307381 23663024 ~ 23677276 (+) True AMCG00011420
TU133378 other upstream 11863 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 2986405 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3014541 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 3190662 20095229 ~ 20162966 (+) False G106139
TU133383 other downstream 419 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 393031 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 3000524 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 3414795 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 3462409 26818052 ~ 26830055 (+) False AMCG00011488

Expression Profile