RNA id: TU133378



Basic Information


Item Value
RNA id TU133378
length 331
RNA type TUCP
GC content 0.46
exon number 2
gene id G106613
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23341308 ~ 23341765 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtttattttaatgatgtgctACAAGATATGCGTTCTGggatatttagaaaacaatatgCTGAAGGTGCCTTGTCAATAGTAAGAAAAGAGACTTACCCTGTTGTTCAGTATCTTCTGAACAGGTTCAGAGTCATCAAAGACGACGAATCCGAAGTTCGGCAGCTTGCCCCCACTGTTGATTCGCAATTCTACCACAACGCCAAactctTTCAAAAAACTCCTTCAGCTCAGCCTTGTCGACATCATGGGGAAGGTTCCCCACAAAGAGCTGGTGGCTGTCGGGATACCTCACTGTACGCCGCACTTCACTGTCAGTCTGCTCACCTTCCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133371 lncRNA upstream 133831 23207246 ~ 23207477 (+) True G106607
TU133349 lncRNA upstream 405764 22929129 ~ 22935544 (+) True G106588
TU133347 lncRNA upstream 478356 22862608 ~ 22862952 (+) True G106586
TU133254 lncRNA upstream 646464 22692737 ~ 22694844 (+) True G106513
TU133223 lncRNA upstream 774047 22564099 ~ 22567261 (+) True G106485
TU133373 lncRNA downstream 11863 23353628 ~ 23355643 (+) True G106609
TU133385 lncRNA downstream 14969 23356734 ~ 23361014 (+) True G106619
TU133398 lncRNA downstream 40517 23382282 ~ 23521931 (+) True G106631
TU133407 lncRNA downstream 197600 23539365 ~ 23540728 (+) True G106640
TU133503 lncRNA downstream 487524 23829289 ~ 23833300 (+) True G106718
AMCG00011411 mRNA upstream 19927 23288041 ~ 23321381 (+) True AMCG00011411
AMCG00011410 mRNA upstream 78470 23240188 ~ 23262838 (+) True AMCG00011410
AMCG00011403 mRNA upstream 501805 22835799 ~ 22839503 (+) True AMCG00011403
AMCG00011402 mRNA upstream 506481 22819761 ~ 22834827 (+) True AMCG00011402
AMCG00011407 mRNA upstream 542515 22798038 ~ 22798793 (+) True AMCG00011407
AMCG00011417 mRNA downstream 62091 23403856 ~ 23415142 (+) True AMCG00011417
AMCG00011416 mRNA downstream 250778 23592543 ~ 23599212 (+) True AMCG00011416
AMCG00011419 mRNA downstream 281015 23622780 ~ 23623300 (+) True AMCG00011419
AMCG00011418 mRNA downstream 314905 23656670 ~ 23657442 (+) True AMCG00011418
AMCG00011420 mRNA downstream 321259 23663024 ~ 23677276 (+) True AMCG00011420
TU132939 other upstream 2974085 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3002221 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 3178342 20095229 ~ 20162966 (+) False G106139
TU132789 other upstream 3178342 20112080 ~ 20162966 (+) True G106139
TU132801 other upstream 3178342 20118575 ~ 20162966 (+) False G106139
TU133383 other downstream 14297 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 406909 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 3014402 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 3428673 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 3476287 26818052 ~ 26830055 (+) False AMCG00011488

Expression Profile