RNA id: TU133432


Basic Information

Item Value
RNA id TU133432
length 406
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G106665
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23517378 ~ 23517803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGCTTGATACTTAGAAGATGCACAGGGTTGGGGCAGCTGAATGATTTTCTGAGCAGTTCTGGCCTTTTATAAGCTTAATGAGGGTATATAGCAGGAAATGCAGGTGACAGTGGTTTGCAGTTTTTCCCTGTTATACAGCATACGAGAACATTTCCTGAACCAggtatcattatatatatatatatatatatatatatatatataattagtgaCTGTGCAGTGAGTTGTTCTGAATGTAACTtgtccaaaatgtatttgtataggTTTCCTctctcaaaaaaagaaaaggaaaaaaaaaaagatgtatcagataattgtaattgttttggtgttgtcttttttgttgtttgttaaaaaaataataataaaatcatgttttattttactacatGAAAGAATTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133416 lncRNA downstream 118286 23396513 ~ 23399092 (-) False AMCG00011414
TU133370 lncRNA downstream 339799 23177228 ~ 23177579 (-) True G106606
TU133368 lncRNA downstream 340249 23176857 ~ 23177129 (-) True G106604
TU133367 lncRNA downstream 340622 23176480 ~ 23176756 (-) True G106603
TU133364 lncRNA downstream 420050 23094291 ~ 23097328 (-) True G106601
TU133456 lncRNA upstream 73298 23591101 ~ 23591309 (-) True G106682
TU133511 lncRNA upstream 277877 23795680 ~ 23797219 (-) True G106723
TU133519 lncRNA upstream 296054 23813857 ~ 23817543 (-) True AMCG00011428
TU133521 lncRNA upstream 311495 23829298 ~ 23834974 (-) True AMCG00011427
TU133612 lncRNA upstream 1064153 24581956 ~ 24582174 (-) True G106817
AMCG00011415 mRNA downstream 9014 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011414 mRNA downstream 27736 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011413 mRNA downstream 156228 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011412 mRNA downstream 171537 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011409 mRNA downstream 457921 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011421 mRNA upstream 998 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011424 mRNA upstream 92926 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011423 mRNA upstream 220973 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011422 mRNA upstream 225275 23743078 ~ 23749052 (-) True AMCG00011422
AMCG00011428 mRNA upstream 296710 23814513 ~ 23815783 (-) False AMCG00011428
TU133362 other downstream 456412 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3649476 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4104363 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4412109 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5326183 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1494402 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2989140 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6107281 29625084 ~ 29625387 (-) True G107713

Expression Profile