RNA id: TU133503


Basic Information

Item Value
RNA id TU133503
length 3320
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G106718
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23829289 ~ 23833300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agttaGCAGCAGCACATACAGGATTTGACTGGATTTCACAGTGTTTACACAGTTCCTCCCATCTATTCACCAGATGTTAGTGACAAACAACACGTGGCAGCTGTAATAACAATGGtattaacatgaaaaacatgaaatccaaatgttataattaaaaaatatgaatataaaagtgGCCTGTAATATGAAATGTGAACATTGTAAACTTCTTAGCAAGCCCCCGGCTACAAATGCTGTTTGAATCTGAAAGTGAAGAACCCAAGAGGAAATGAGACAGCTAAGCTACTCAAGAAAACATCCCAGAATAAGTGTAATTCGATAGCTAGTGACGTCAATTGAAGCGAATGTGCAGAGCTGCGGTTAAAGGGGCTTGAACTTGTAACACTACAGCTCTTAAGTAGCCCTTTCTTAAATTAGAACCATTTCAGAGAAGCTGATCCTCCACATTGGCTCAGCTGTGTTTTGAGGTAGACGGCACAAACAACGGATTTTCCCTCAAAGGAACCTCAAGTCTTCCTTCAACTTGGCAAACAAAGAGGGTTATCTATTCTTCAGCACTGTATGTTCTTACACATATCCTGGGTTCTCTTATAAGACCACATTCTGTCATCTGTCATAAAAAATTATGAGCAAGCCATGAGTAACACTTTCTGAATGCACTTACTGCAACGTTCGTCATCTGATTGACGCTGTGTAGCTGAAAGTCCAAGGCAAAGTGAAAGACACACCTTATATCACCAAACTAAATGCATCAGGCTTCCCTCTATGTGAACTACATGACATGTGCTACTGTACAGAGGCTAAAAGGAGGAACTTGGATAGGTACACAAGCTATTAAATCCTTTGTGAAAAGTAGCATTTTGTTCTTCCAAAATCTTTACTGATGATCGTTTAcaacattcatatttacatggtaaatgctttcattttaaatataagttGCTTCATAGAAGGACAATATGTCTATACAGTGGAATGCTGgcaataaaatactatttgaataaagcaatttaaaaatggaaatgctcATTTATGAAGCATGTTCCGGGAAGCaataagtttgtttttcaatagcATGTTTCTTCCATTTCCACTCACGTCTTCATACATGCTTCTCGTTCTACATTacataacttttaaataaaggaacaaATTAAAGTATCACACCCTAGTTACACAACCTTATCAGCAGGtgttaactaaataaaataaaaatgcaataacgGGTTTCAATGTGGGCTTTCCCGTGGAAACACAAGGTGGTCATACTGTGGCTGCTGTGATTGCCTATGGATTTTGACAATAAAAGATTAGGTGAACTTTAGGACGTGATTCTGCTAGGATGacaggctgggattaaatcaaaactttcagcCACACACTATTAGAAAACTACAATCCTGCACTCAGAGGCAGCTTGATTTTTTGTAAGATGCTGTTTTCCTCTTCACACGAATGGAaatgctatgatgtacaggctTGCGGTTTTGCTATAAGAGGGTGGGTCAACGATTTGATTTGATCTTGTTCCTAGCAAGGGTAAGCCAATACCTAACATAACAGGATACAACAAACAAGTATTGGATTGCcaataaaaagcacacaaaaaaaagcatcAGCAAAGTAACATGCAAGTTCTTGTCTTCTTGCTGGGCATACAACAAAAACTTCTGAATCTCTCTTCCATACATTGTTTTTGAAGACACAACAAAGAGGGACACTTAGTTTTATATAATGGTTATCACAGCTCTAAATTTTTAACAAAGAATACGCACCTCTTTACAGTAAAAGTTGATGAGATGCATCTATTCTATTCAACTattcatgtctatttttgaactTCAGCGCCAATGACAATATCATACCGCTTTAACAACATCACAAGGGCCGGTGATCGGAAGGAACATGTTTACTGTTCACTACAAGATACACactcacttcctgtttacagAGCTAATCAGGAACATGCCCGAGTACAGTGTTTACATTGGCttgtattttcttcttgcaCTGTTAAATTTAGAGAGCAACCACAGTCAGGACATgtaatcttgtttttctttgccatTACCTTATTCGTACAAATATTTGCAACATTTTCTGGTGCCAAAAGTTTTGTATGCATGCAGCTGATGAGAACTTATTTTATGTCAATAACAACATTCTATTTTGCCAGGAGCGAAAGAAAGCTTAAATGTGGTTTTGTTAAAGGCTGCATAATTGAGAACAGAGATACAAAAGCATAGAAACAAAAcccaaatatataaatcaacctatgctatacattttaattctattGACACATACTTGATTCTGGTCAACAACTTGTCCACTAGTAGGAAGTATTCAGAATGTAATTATAACATTAGCATATGcgttttcatttaaacatgtgGATGTATGACGTTaacttttgtattaattttgctAGAGGTTCTTTGGAATGaggtattataataaaaaagcaacacatgATGTACAAAACCATGCTTAGTCCTCGGTTGGTCCACTGACTCACTCAGAGTAGGGACatttatgtacatgtatttatcgTAAGCACTTTAATactgttaaaatgttatttagctttattaatattaatacattttcgtGTTCCTTACTTGACAGTGTAAATGATAAGTTACTGATTTGATTCTGGATGGACATATATCCCATATATCAGTGTGCTCCAGTACAATCTCTCACACATGATTCGTTTCGAGTTTTCCAATTAGAAATAAACTGTTCTTTCTGCCAGCAAGCCCTATTCACGGTCTTCCTTTCTTTACAGAAAACACCAGAATATCAAACACTTGTTTCTGAAGTGAGGCTGGAATTGAGGATCAGTTGAAATGTGGAACTTGGAAGCAAGCAATATCCAATTGGTCAGCATAGTCTCCTTCAAGGAATGTGTCATTGCGTCCATAACTGAAGGACTACAGTCCTGTTTCTCCTTTCAAACCCTGTTCGTACAAGCCGTAGCTTTCTTCTGTTCCATTCATGTGGCCAGGAAAAGCACAGAAAATTGTCCATTCTAGTAACTGTGTCAGGCATTCTCTATCCTGCTTGGGTTAGTCCGTACCCGGTACATGATGACAGACACTACTGGACACGCCAGTAGGGACATCATGAAGATAACTGTGGCAAGAATGACCAGCACAATGGCCCAGATTTCAAGGATGTGTTTTGGGAGTTCAATTTCTGTTTGTTCCATCTCAATAGCTCCTTGGGTCTTCACATTCAAGTgccctttaaaaacatgaaataacaaAGGATTAATTAGTGATCCATAATCTGTTcacttcaataaaaataaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133407 lncRNA upstream 288561 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 307358 23382282 ~ 23521931 (+) True G106631
TU133385 lncRNA upstream 468275 23356734 ~ 23361014 (+) True G106619
TU133373 lncRNA upstream 473646 23353628 ~ 23355643 (+) True G106609
TU133371 lncRNA upstream 621812 23207246 ~ 23207477 (+) True G106607
TU133524 lncRNA downstream 8632 23841932 ~ 23844911 (+) False AMCG00011430
TU133535 lncRNA downstream 107712 23941012 ~ 23971183 (+) True G106742
TU133666 lncRNA downstream 1086551 24919851 ~ 24943678 (+) True G106863
TU133676 lncRNA downstream 1105722 24939022 ~ 24940823 (+) True G106871
TU133680 lncRNA downstream 1153538 24986838 ~ 24991237 (+) True G106874
AMCG00011426 mRNA upstream 15573 23786963 ~ 23813716 (+) True AMCG00011426
AMCG00011425 mRNA upstream 53781 23760289 ~ 23775508 (+) True AMCG00011425
AMCG00011420 mRNA upstream 152013 23663024 ~ 23677276 (+) True AMCG00011420
AMCG00011418 mRNA upstream 171847 23656670 ~ 23657442 (+) True AMCG00011418
AMCG00011419 mRNA upstream 205989 23622780 ~ 23623300 (+) True AMCG00011419
AMCG00011430 mRNA downstream 2519 23835819 ~ 23844867 (+) True AMCG00011430
AMCG00011429 mRNA downstream 76400 23909700 ~ 23938038 (+) True AMCG00011429
AMCG00011434 mRNA downstream 315657 24148957 ~ 24174504 (+) True AMCG00011434
AMCG00011435 mRNA downstream 376690 24209990 ~ 24242241 (+) True AMCG00011435
AMCG00011437 mRNA downstream 960072 24793372 ~ 24808824 (+) True AMCG00011437
TU133489 other upstream 76287 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 472730 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 487524 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 3462066 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3490202 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 2522867 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 2937138 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 2984752 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 3878906 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 5864301 29697601 ~ 29699419 (+) True G107741

Expression Profile