RNA id: TU133511


Basic Information

Item Value
RNA id TU133511
length 445
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G106723
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23795680 ~ 23797219 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTACATTCATCTCGCCTCAACATCTACAAGTGTCAGACCCTCGTGCAAAGCTGATGTTTCccttgtgtgtgactgtgctgaTTACGGTGTTGACAGACCTTGGGTTTGTTTTGGAATGCCAATGCCCAGACTTGAATTAAAGCTGGATGAGGATCTCAGGACCTCGTTGTCTCTCACTAGCTCTTCCACTCGTTGACGTAATTTTGATGCCTCCGTCTGGGATTCTTCTAGCAGGTCCCCTAAGCTCTTGAGACCCTTCATCCGCTCCCTCAGAATGCAGTTCTCTTCCAGTAGTTGTTTGTAGGCCAAACTGCTTGCTTCTTCCTTCTGCTCACTCCCACCCGGGTCATAAATTCGATAGGGCCCTTTCCCCTCCATTGGTAGCACTTTACTTACAAAACATACTGCTGCAGGGTCTTACACTGacagggagggaaaaaagaa

Function

GO:

id name namespace
GO:0007369 gastrulation biological_process
GO:0060026 convergent extension biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133456 lncRNA downstream 204371 23591101 ~ 23591309 (-) True G106682
TU133432 lncRNA downstream 277877 23517378 ~ 23517803 (-) True G106665
TU133416 lncRNA downstream 396588 23396513 ~ 23399092 (-) False AMCG00011414
TU133370 lncRNA downstream 618101 23177228 ~ 23177579 (-) True G106606
TU133368 lncRNA downstream 618551 23176857 ~ 23177129 (-) True G106604
TU133519 lncRNA upstream 16638 23813857 ~ 23817543 (-) True AMCG00011428
TU133521 lncRNA upstream 32079 23829298 ~ 23834974 (-) True AMCG00011427
TU133612 lncRNA upstream 784737 24581956 ~ 24582174 (-) True G106817
TU133665 lncRNA upstream 1118945 24916164 ~ 24919197 (-) True G106862
TU133694 lncRNA upstream 1189586 24986805 ~ 24991176 (-) True G106885
AMCG00011422 mRNA downstream 46628 23743078 ~ 23749052 (-) True AMCG00011422
AMCG00011423 mRNA downstream 53887 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011424 mRNA downstream 184169 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011421 mRNA downstream 233751 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011415 mRNA downstream 287316 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011428 mRNA upstream 17294 23814513 ~ 23815783 (-) False AMCG00011428
AMCG00011427 mRNA upstream 32078 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011431 mRNA upstream 168900 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011432 mRNA upstream 196919 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011433 mRNA upstream 292053 24089272 ~ 24102925 (-) True AMCG00011433
TU133362 other downstream 734714 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3927778 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4382665 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4690411 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5604485 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1214986 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2709724 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 5827865 29625084 ~ 29625387 (-) True G107713

Expression Profile