RNA id: TU133676



Basic Information


Item Value
RNA id TU133676
length 429
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G106871
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24939022 ~ 24940823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agaatacACCTGTAGGCACTGTTCTGTTTACAGTGTCAGCCACAGATAAAGACCAACAATTAGCAGCTGTTGTAAATTACAGTATTGAGCAGGTTGTCCCAAATGACCCCGATCTTTTTGAAATTGCAAGAACCGGCGAGGTTCGACTAACTGCACCTTTCAACTACACTAGCAAAAGCACTTTCTATCAACTAAAGATCACTGCAAAAgATGGTGGTGGGCAGCTGGATGGGGAAGAAGTTTTTCAGAACTCCTCTACATTTGCCTTCATTGCAGTTGTTGACGTCCCTGATATTGATCCACAATTTCTAAATGTAGTTTTTCAGACCTCGGTTAATGAACATGCTGCTGTTgACACTTCTGTGTTTCATGTGAAAGCCATTGATGGTGACAGAGGAATCAATGACAACATCATTTTTAGCATTCAGA

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133535 lncRNA upstream 967839 23941012 ~ 23971183 (+) True G106742
TU133524 lncRNA upstream 1094111 23841932 ~ 23844911 (+) False AMCG00011430
TU133503 lncRNA upstream 1105722 23829289 ~ 23833300 (+) True G106718
TU133407 lncRNA upstream 1398294 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 1417091 23382282 ~ 23521931 (+) True G106631
TU133680 lncRNA downstream 46015 24986838 ~ 24991237 (+) True G106874
TU133681 lncRNA downstream 46015 24986838 ~ 24991174 (+) False G106874
TU133720 lncRNA downstream 106701 25047524 ~ 25049147 (+) True G106906
TU133765 lncRNA downstream 396729 25337552 ~ 25337767 (+) True G106946
TU133766 lncRNA downstream 430656 25371479 ~ 25371745 (+) True G106947
AMCG00011441 mRNA upstream 22082 24915075 ~ 24916940 (+) True AMCG00011441
AMCG00011438 mRNA upstream 52261 24881356 ~ 24886761 (+) True AMCG00011438
AMCG00011439 mRNA upstream 114993 24817579 ~ 24824029 (+) True AMCG00011439
AMCG00011437 mRNA upstream 130198 24793372 ~ 24808824 (+) True AMCG00011437
AMCG00011435 mRNA upstream 696781 24209990 ~ 24242241 (+) True AMCG00011435
AMCG00011440 mRNA downstream 30724 24971547 ~ 24986723 (+) True AMCG00011440
AMCG00011443 mRNA downstream 62841 25003664 ~ 25014869 (+) True AMCG00011443
AMCG00011444 mRNA downstream 103382 25044205 ~ 25047214 (+) True AMCG00011444
AMCG00011450 mRNA downstream 130914 25071737 ~ 25093488 (+) True AMCG00011450
AMCG00011451 mRNA downstream 153706 25094529 ~ 25105105 (+) True AMCG00011451
TU133489 other upstream 1186020 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 1582463 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 1597257 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 4571799 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 4599935 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 1415344 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 1829615 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 1877229 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 2771383 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 4756778 29697601 ~ 29699419 (+) True G107741

Expression Profile