RNA id: TU133934


Basic Information

Item Value
RNA id TU133934
length 581
lncRNA type inter_gene
GC content 0.55
exon number 5
gene id G107082
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26196112 ~ 26197833 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGCTTTTGAGTCTACCAGCCTCCTCACCTTCTTGTACGCCATCTCGAACAGCTTGAGCGAGGCCTGCTGCAGGTTGCTGGAGGCCTGCTTTATGTTCTCCCCCGTCTCACTGTCCTTCCGTGCCAGCAGCTCCCTCACCTTGGCGATCTCTTCTTTCAGTTTGTTGCACTCATCTGCAGGGAGCTGATCCTTGAACTCCTCCATCTTGGACTCCGTGTCGTGGACAATCCCCTCCGCTGTATTCACCGCCTCAACACGCTCCTTCCTCCTCCTGTCCTCCTCAGCGTACTTCTCTGCATTCTTGATCATGTTCTCGATGTCGTCCTTGCTGAGGCCACCAGAAGACTGGATTACAATCTGTTGCTCACGGCCCGTGCCCTTGTCCTTGGCAGACACGTGTACAATTCCATTGGCATCAATGTCGAAGGTCACCTCAATCTGGGGCACTCCTCTAGGAGCAGGGGGGATCCCCACCAATGTGAACTGTCCCAAGACCTTGTTGTCTGaagccatctctctctccccctggcACACCTTAATCTCCACCTGGGTCTGTCCATCCGCAGCAGTGGAGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133901 lncRNA downstream 68347 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 177379 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 179432 26015984 ~ 26016680 (-) True G107038
TU133878 lncRNA downstream 183665 26009520 ~ 26012447 (-) True G107037
TU133876 lncRNA downstream 189656 26005979 ~ 26006456 (-) True G107035
TU134042 lncRNA upstream 114010 26311843 ~ 26329609 (-) True G107166
TU134043 lncRNA upstream 190379 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 190379 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 190379 26388212 ~ 26409375 (-) False G107167
TU134130 lncRNA upstream 635732 26833565 ~ 26833850 (-) True G107232
AMCG00011474 mRNA downstream 262 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011469 mRNA downstream 33234 26138966 ~ 26162878 (-) True AMCG00011469
AMCG00011470 mRNA downstream 76097 26113869 ~ 26120015 (-) True AMCG00011470
AMCG00011465 mRNA downstream 176712 26017176 ~ 26019400 (-) True AMCG00011465
AMCG00011463 mRNA downstream 297285 25877496 ~ 25898827 (-) True AMCG00011463
AMCG00011475 mRNA upstream 122188 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011482 mRNA upstream 150755 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011480 mRNA upstream 164558 26362391 ~ 26368116 (-) True AMCG00011480
AMCG00011481 mRNA upstream 171488 26369321 ~ 26369867 (-) True AMCG00011481
AMCG00011479 mRNA upstream 172340 26370173 ~ 26377379 (-) True AMCG00011479
TU133710 other downstream 1177780 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3135146 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6328210 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6783097 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7090843 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 309110 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3427251 29625084 ~ 29625387 (-) True G107713

Expression Profile