RNA id: TU134004


Basic Information

Item Value
RNA id TU134004
length 4342
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G107128
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26447202 ~ 26451575 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTCTCATTCCAGGAATACAGGCCTCAATGTTAATTTATTGCTTAATCATTCATGGCACAAAAATAGAAACAGTACAAGTTTTGCCATGCATGCCAGCTACACTGAGTCTAGCtcatacaaaacaaagcagacTTCTAAGCCAATAAGGAGCTTTTATACTGGATATGAGGATCAGTCAAGAGCAAAAggattacaaaaatgaaaatacaaaaacaataattaaaaaaaggaaaaatgttggATTGTACAGATCACAGGAGTGTAACACGGCAAAACAGATTATGTAAAAATACCTAAACAAGGATCACATTAACCTTTCAGATATTAGTAGtgccttaaaaaacaaacaatacaaaaaccaGGGCCGCATTCCCAGAATGCTGTGCAATATTCCGTCAtgaccccccagccccccaccgTTTCCCTCTCCACTGAGCAAAAGTCAATGAAACCGTTTCTGTATCATAGACGTTGCAATTTGTTAAGCGAGTGACATTTTCAGTAATAGTAAAATCATGTACAAAAACGTACACAGATTGCAGAGCTCTCAGACCACAGGAGTAGGAGGGCATCCCACCAGACCTGTCTGTCCTCCAGAATCAAAgactctctctgtgtctcctcaCTGACAGCCTTCACATCTCACTTCCAGAATCCCCAGTGCCAGTTTGCTATAGGCTCTTCAAGTGTTCTGAATTACCGGGATAATTGCTGATGTTATGTCAAAGTACCTTGTACCCACACTATAGCACactacatatttacatttgtatgctTCATACACATATCAAAAAGGGCAACAATTGTCTGTTTACTAGTACTAAAAcgtaaaataacagtaataattacTATGCTGTGAAGGTACTCATGCTGTGCGTTTGCTTCTGACATTTTTAATGCTCTTCAGACGGCTTCATAAGTGatgcattatttcacaaaaaaaaaaaacacaaacaaaaatgactttCTTCTCTTCACTACTGGGATTCTGAGCAAATAGAGTTATGCACATCACAGGTACACACACAAAGCCCACACATTCACATTTCATGTACGACAGAGACATCAGTAACACATTATGTGGACTTGACACCAAAAGACGCATTTCTGACAATGGCTTGTTTTTCCGATCACACATGGTTCACAAGTCAGAAACTGACCAGAGCGTACAGCTGAAGACTTTGGTCCGAGCCAGCAGTAGAAAgccaaaaaaaccaaaaaacaaaaaacaaaaaacaaaaagaaaagcccCTTTGTTATAGTTCAGCAGCTATGCTCAACGACAACTGGGAGAAGCATCTCAAAATTAACTCTTTGGTGTTTTACAATCAGCCTGAATTTGATGCATctcatttgatcaggatcaatgAAAagacttaaacaaaaacaaaccgaCACTGAATTATGGGGAGTTGAGATACTGAAggcaaataaaatcaaaacaatgatCCATCCATTTCCTATCTGCCCAACTCTggggagataaataaataaatcccagtgTGTGAGATCTGCATCTGCAGTTGCCACCATTTACTCCTAGTAACGAGCAGGCTGCAAATAGTCTGTTTCATTACAGTGGTACAAATCAGCCCTGTATAACAAGGTTCTGGAGACGGACAGTAATGGCCATGCTGTTACTGCTCTGGAGGCTGTACAGGTCAACTGTCTGTGTCACGCTCACCTATGTAACTGTACCagacacaaatacaatttaagctGCTACTGCAACAACACGTATCAACCCCTGGGACTCTCAGTGCTGGGGTCACCGTCACTTATACAAAGACCACGATTGCACATTtgctctgtgtatgtgtgtgttggtgaaCTTCATAAGAAACACAGAGAGCGCCTTTGTTTTTTGATCTCTACCAAACACAATGTCCAggttctcttttctttctatacctttttaagattgtttttcaAGTGCACAAGAGGCAtgcagtataaaataataataaaaaaggaaactgacACTTAATAATCAGCAGCCACGACATCAGGTTGCATGCAGATATAATCCAAGTGAGAATTCAGTCATATAtcgagagagaaagaaaaaaagcaccaGAGAAGAATCAGACAAGTATAACAGCTCCTGGTAACATAAGAACCAGCTTCCTGTAGAATAATTACAGAAGGCTGTCGAGTgtcaccaaaaataaaaaacaagtcaAACTATCAAACAACTGACTCTGCAGTTGGCGAGCCAGGAGAAGAGCTTTTACCACGGCATCGTAGTAAGTAATATCCGGGCGTCATCTCCACACACCCAGAAGGGAACGCCGACACATCTTTGTAAGTGCGCTGGAGTCCTCGCCTGAACTCTCTCTCAGGCACTGCTGCTTTAGCACTGCTGAGCTAGGGTTTCATTAATATTCCCCAGCCAGTGATGCCTGATCGCACTTTGCATAACTATGGTCACAGTTAAGCTAACTAGGGCGATGTGCCTTACAATGAATAACAATAAGTCTGTTTCACTATGGCTGTGCATGAAGATGGGTGACTGCTCTTGTACAATATTTTCACACACCAAATCAGTTCCGAGTCCCATTTCCCGTACGTGATAGATTTGTTACATGACGTAGTTACAGGGTAATCACAACAGCTTCAGAGGGTAATGAACTTGGACACCATGCTGACTGCTGTCAGAGGGGCGCAGAAGAGCTGAAAACAGACTACCTTTGCCTcactgattacactgtacagcaACCAAGATCTTTACAACCAGGCAACAGTTTTATGATTAAGGCAATACAGTGCTACTGTGATGAAGTGTGTCAAGTACTGTAGCTGTCTTCTGCTCACACCTGTGCCCCAAATTAggcaaaatgtgaaatagatGGGTCTGAATGGCCTTCTCCTGTCCTACAGTGCTCTTGGGACAGCTGCATTGTGCCAAAATGCCGAGACGAATACAACAGTGTTGTGAAGACTATGATATGTATGTGAATATTAGTTTGGCTTGGGGACACTGCTTGACAGCATGAAAGACACCCCTTTAGAAATTGAGAAGCAGGCCTTCATTTGTTCCCAAAGGCAATGCAGTGTGAAAACAGGGTTTGTCAGTGACTCGCCCCACCCTATCTACCAGGAGAGATTTTGGTGTCTCCTACAGCCCTCCTCCTCTGTGACCATGCAGAGTACTCCAATGTAAGCTGGGCAGTCCATGGCAAGACCCCAAGTGTCTGTAACAGTGACACTGGTACTGTAAACTCAGCAATAAATGGATACCTGCGTGCATTTGAACACAACAGTAGGCAAATGAAGTATGAACACCATAACTAAACCGCCGACAGTCTTTTCTTGCTGGGTTTTTAGATGAGCAAATTCTCTGTGAAACTCTGATGGCTTGCAGAGATCCAAGTATGTcgtaataaataaaagcagaagggaataaataaaataaaaaacttcatTTTGCAAAAACGTTGTCAGTTCTCTTGGGTAGCAAAGGAGTATGAGGCAAGTTTAAAATGATAACGTGTGTACTTGTATCTCAAGCCGTAGCTTTGATCTAAAATTCAGTCTTTAAGGTCATAATCACGGACAACTGACCTTAATGGTTTACAtctttagatatatatatatatatacacatacatatattcataaatatatactcacacacaaTAAAAGAATGCCggtattcaaaaacaaaagtaaagctCATAAAATGGATCCACATCTGTCCATGTGCCAGAAATGCTGTGGACTGTTGCCTTGGATTTTATAGAAGTGTTCAGGTCAGCACATGTTCGGTCCAAACAGTTCAACAGAGATGACAGGCTTCAAAATGACAGCCTTCCTTCATGCaagtttttcttcagtttttttttttttttttaagatttcccAGTGTGAGAAACTACTTGAAATTGAAACCGTAAACAAGAATCTTGAAacctggaagaaaaaataaataaaaatcttccagctgttaaacaaacaaaaaaaatattttcagcacTTCCTCAGTAAAAGGCCAAACGTTCATAAAGAAAAAGATGGGAGAGCAGGAAATGAGAGCCAAGCCATCCCAACATGCCTGGAGGGCTGAGAAGTGTGGTGTTGCTCCCCTGGGTGCAGCAGTCAAATGGGAGCTCGCTCGGGGGGGGTGTCTGAAGGCACTGGTTAGCAGTGCAGCTAGACACACACGCAGACGACAACCTGAGACACACCGGACCACGCCACTCGGATGAGCGCAGAGGGCGTCTAAATGGATTTGGAAGAATCCTGCTTGCTGATTAAAACTTCCAGCAGCCGGAGTTTGGCTTTGATCCGTTTGTATTCTTTGTATTCGTCCATCATAGGGGCGCGGTCTTCCTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134002 lncRNA upstream 59218 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 154755 26277374 ~ 26292447 (+) True G107098
TU133936 lncRNA upstream 244583 26199950 ~ 26202619 (+) True G107084
TU133839 lncRNA upstream 558364 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 651590 25795413 ~ 25795612 (+) True G106994
TU134125 lncRNA downstream 387866 26839441 ~ 26842778 (+) False AMCG00011488
TU134230 lncRNA downstream 1015829 27467404 ~ 27468567 (+) True G107321
TU134242 lncRNA downstream 1045752 27497327 ~ 27501442 (+) True G107331
TU134298 lncRNA downstream 1162386 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 1339291 27790866 ~ 27830847 (+) False G107402
AMCG00011477 mRNA upstream 11744 26413301 ~ 26435458 (+) True AMCG00011477
AMCG00011478 mRNA upstream 37829 26401965 ~ 26409373 (+) True AMCG00011478
AMCG00011483 mRNA upstream 49220 26388294 ~ 26397982 (+) True AMCG00011483
AMCG00011476 mRNA upstream 86562 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011472 mRNA upstream 182675 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011488 mRNA downstream 375746 26827321 ~ 26842792 (+) True AMCG00011488
AMCG00011491 mRNA downstream 458776 26910351 ~ 26923941 (+) True AMCG00011491
AMCG00011490 mRNA downstream 506567 26958142 ~ 26969283 (+) True AMCG00011490
AMCG00011493 mRNA downstream 607417 27058992 ~ 27067377 (+) True AMCG00011493
AMCG00011494 mRNA downstream 736976 27188551 ~ 27195648 (+) True AMCG00011494
TU133992 other upstream 86427 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 2694200 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 3090643 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 3105437 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 6079979 20361208 ~ 20367223 (+) True G106242
TU134100 other downstream 318863 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 366477 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1260631 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3246026 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 3406395 29857970 ~ 29875476 (+) True G107784

Expression Profile