RNA id: TU134049


Basic Information

Item Value
RNA id TU134049
length 8223
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G107167
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26388212 ~ 26409375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattttaatgtatatacgTTTCTTTTATTTAGAGAATTTGATAAaccaaaacattgtttaaacatcTCGACATCTGCTGCTGAAGTCATTGTATCATAACCCATGTGAATGCACAAAGTTCATGACTTGGAACACTTGGGCATTCCAGGAGAAACTCTGAACGTTCTTCAGGCAGTTTACATCTCTGGATGGACGTCCAGGACATTTACACTTCTCACAATCCTTCTGCCTGCACCTCATGTGCGCCAGATGTCCAGGCCTGCCTTGCTGGGACATGCGTCCCTGCTAGTAGTGTCCCATTGGCAGCCCGCGCCACCACGTAGACCAGAATTACACCGCAGACCATGCAACTCTGGATCCAGCTGtatgcagagagaaaaaaaaagttagaatCTCTAGTTCTCTCTTTCAAGGTGATCGCTGTTCTCACAATCCAAGGCATTCTTTTCTCTGACAGTATTACCCATGggtatttttcatatttagatTCCAATTTAATTAGCATGCAGAATgatatttaattgcttttagaGGGGATAAAAGCTCTTTAACAGGTTCGAGCAATGGTGCTTTGGTGCATATACATTAAATGAGACTAACACATTGCTGCCCTCTTGTGGTCTCCAGAATGAGCTCAATCAAAATTAACCTACAGCTAACCTTTAGCTCCATGATCACTCAACTCTGCTATTCAAGTGTCAGTTCTTGGCAATAGATATATTGGGCTAAACTCAGTATTGAGCTTTTTGCATGACAAACATTTAATAGAAAATTGCTtttaccaatatatattttataatgggCCTACAACTACTATACTATAACTACCTGCAAAATGTGTGTGAGGGAGGGGGTGACTGATATTAATGGACATATTTGCAGTTTGATTTGAGGAATGCAAGCAGGAAATGGAAACAATCTCAGGAAACATCACCAATCAACTGACATGAAAAACGGTTTTGTTAAGATAGACAAAACCATATACCCAAATGCAATCAGTCCCTGTACACAGACTGTATACCAAGTACATCATCTCTCGTCTTCACTTAAGCGTTAAATTGTTAGATCATTCTATAGCCACCCCAGTGACTCCAGTCGTTGCCATGATGTGGAGCATTGCTTCTGGCCGAGAAACTACCTCTTTTATTGGCCCACAGCCAGAGGACTGGTTTCCATAGCCACTGCGAGTCACAGTAGCTGCTCGCAGCCGCCCCTCCTCCAAGGCCGTCCAGCCATCTCTAGCACCCTAGTAACCACGGTTTCCATAGCCACCGCAGTGCCTGCACCTACTGCCCTGAGTTCGGCACTCTCTCGGCTCGGGGGTTACCGTCCTCCTACAGATGGAGAGCATCTGCGTGGAGACTCTGTGGACACGGTGTGGCAATTGAGCACCTTGTCGGCGGAATCCCCATCTTCAAATTGGACAAAGCCCTGCCCCTTCCACAACAATGccttcttgcaattgcaaatcCACCCCCTCTGCACCATGTGACTTAGGGGCCCTTTGTCACCTCGGCAAACAATGGAATGGGTCACAAAGCTGAAGCATCTGGAGCATGTGGAATACTGGCAATGCAATACTACAAAACGCACCGTACCCTGCCATTATCCTTCAATTTTCTGCACAAAAGCTACAACGCTGAGGGCCTGataatatttttctgttccttCCCTAGGCCTTTTTCCTCCTCAGCCGGGCGGCATAATGTGAGCCGTGTAAAACAGTCAGCGCTGCGCTTCACAGCACGTCGGCACGGTCGACTGCTGACATCACAGTCACCTCAGAGCCGCCATTTCCTCACAACCGACGCGCTGCTTTACTTAAAATAAGACCCCATGCATTCCAAAGCAGATGTTAATGCCTTCTGTTATTAATTCCATGCAGATGAACAGAACATAAGCGTGTTTGTGACATGTGGATATACCAGGCAGGAAATGAAGGATTTTTGACTGACAAACACAGTTCTGATATTCTAATATGACTAGTACTTTCCAAAGTAGGAGCTAATGTACACGGGTTATACGTATAGTGTGTAAGTGTCCAGGAACACACGGAAAAGATGCAATTAGTTTTCCTTTGCTGCACTGAtaaaaatcaaaagcagaagGAAAATATTTGATAATTTATCCATCACTCGATACTAAATCTCAAAATACAGGCGAGATATAATTcaagtaaatgtatattttcctttgtGAACATATTGTGTATGGCCCTCGATGCCAGTTGATACGAAATGGATTGATTTGCAAAGCTGCGGAGAGTGAAATGGATTGTTTGTTGGCGCATTACTGCAACAGCTGGCCCTTTACAGATTCCATCCATCACAAAGCCCTCCCACTCCTCCCCCCACTGCTGCTGCTAACACGAAGCCACTGAATTTAGCTTCAAATTAATGCAaaccctccccccaccctcctccgTGTTCAGAAGTAGGAGCAGGCCCAGAGCAAACAGGATCCAGTGAAATTAAATTGCTTGAGGAGATTCATGACTAGACctgaccattttatttttaaaggcacttAGTTTTACCGTGGATATTTAATTTGCTACACGATGTATGCTCCAAATATCAACGACAAAAAGATTTAAAATTTACTTTGGTAGTTAATACAACACACAAATTCTTACAATGCATGGCGTttgcaaaatcaaaaccaaaggAATATCTATTTGAGTTGCTGAAGAATTAGAGGCTAGCACGATtgtcaaatgttttatgaatctCTAATTTTTAGGCACAAAGGGTCTTTGTCTGGACACATGCACTTCTTCCATACAGaggttaaaatatatagttaattttattatttgtgtgtacttacgaaaggaaaatattaacaGAAGTAAATGCAATATTGAGAGTAAATCTTCAACTACAGTTGGCTCCTGTATTTTAGACTTTCCCTTCCCTTTCAGgttaattgaatacaaaatagtAGGCAAATTAGTTGGACCACAGGaaatgcaagtgtgtgtgttgacagGGGTTTTACATGGCCTAATTAAAGTTGAGAGTAAACCAGTGAGCTAAAAAGCACTAGGTCAAAGAATCTTTATAGCTCCCACTAAGACAAAGCACTCAACCAAAGTCTCCGTCATTCACACGCAAACACAAAGCCAGCTGGAGGACAGGGTCCCACATGGGGAGACAGATGGCCCAATTGTTCAAATGGACAGTGTAGAGAAAACAGGCTGGTGCCCAAGTGTTTGAAATTCAAAAATTCCCAACATGAAACCCTATCAGGCTGGACCACATGAGGATTTAGCAGAGGGGCAGATCTTGGAAATGATCTCAAAGATTCCAATCAAGTAGCTTGGCCAAACAAGACATGGCCTAATGAATTATTGAGCTTGTTAAATTTgcacatgaaagaaaaataattaaaaaagatagTGAAAAACTTTATAGTCATAATAgttgaatcaaatgcatttcaagatattatTTTGATCTCCCAAAGGTGCAGTCTACCTACAAGTATTCGGTACAATGCATGTAATTCGAAACCAAGAAAGATACATGGTCTGCATCCTGATATCCAAGATTGTATTCAAGACTCAAGGACATTCTTCCAGGTTTGTGGCTTGAAcgtatatgcatgtatatagtAGTTTTCCTTAAATGGAACATCCCTTGTAACTCTCAAACAAAATGGCAGTGGAAATTACATCCCACTCAATGATGAAAGGAAGACACAGTTGAAATGCCCATGGACTGTGCTCACCTGAGACAACACTGCAATGCACTCCTCTCAACCTCCTCTGTGGGGTTGTGCTCTTCACAGCTCATCTTCACCCAGTGGTGAGAAAATTTAAGAAGGTATTAAAATCCACGAGCATTGCTCAGTGCATtctggggaaagagagagaaaaaatagaaaCTTTAAAACCTTGAACGTGGCAGAACAGCTTTGAGACAAATGCATTGAAGCCTAAAACTGACTGACTTCGGTCTTCCTCCATCTTAAGCACttgtgctgggggggggggNNNNNNNNNNTTGTAACTAAAGAGTGAAAAGCTTGATATTTAACATTTCACTGCTACTTCTTACAGCTTTAGGGGGTTTTACACACCATTATTTTTCAGGTTTATGTTTTTGAACCACCACACACCAAAAGCCTATTTATTCAATTACCTGAAATTTAATGGATCACATATACTTAAGATCAGCTGATGGTATTGATTCTATTCAATTCAAAGAGCAATCCAGGCCTGGGTCAATTATTTACACTATTACCACATGTGCCTGTCTTGTTATATAGATGGATAGAAATCAAGCAGAAGTGTCTAACATTATATGACattgtatcattaaaaaaataaaaaagtctaaGATCCCCAATTAGACCAAATCTCCAGTATTCAGtaggacaaaatatatatatatatttgtttttggtttattcaAACTAGACAGCCATGGCCGCTaagtttaattgatttataaagtcaatttcaaaattttaaaacacagcactAGTGGAAATGTGGCTTGCGTATCCTGGTGCCCTTGGTTCCTTTTTTGGAGACTTCTGATGAAACCAAGCATATGCTGAGCTTTCTAAAACTAAAGATCTGAAAGTACTAGTTGGTTGCAGGGCCCTGCGGCACCATCAGCCAGAGGCTAAACCAAATTCTGGAAAACTTTCTCTGAACATTGCATGCAAACAGAAGCAGCTTATGAAGGCTTACTAGGTAAGTTTATGCACCATAGCAAAAGTGAGGGGGAAAACAGTGTAATCATAAAGTGTAGACATACCTAAAGTCACAAACCTTGCTTATTTACGCTGTTCTCCTTGCATTTGGTGGGATAAATATCTTGAGCTAAATCAGCAAGTAAACGCAGGAAGACTAAGCCCCAGAGTCCGGTTTGACCTTCTTTACTGAAAACTAGCTGGAATATGGGTTATAAGACATAACATATGGCCTTTCACCAAAGACActaaaagtacaaaaaacaaaaatgtatattacaacTAATTAGTTCAGTCTTGATATTAagtagtgtttattttgtgaaattactttAGTAACAATCATTAAGAGTTTCTTGCCTCCTGGTTTAAGATGTGGGAAACTAAAGAAATCTCACAACTGAAGTACAGGTTACTTATGAAGCATGCAATTTACTGGAGTTTGAGAGGAGTCCCAAAAAGCAGATGATGCATCGCATGTGAGAAACTCTGCTCAttaccttaaaaacaaaactcattCAGGATTCCCCTGGTTCATCAaatcctttgtttttaaaaataaaaaataaaaaactttatttttgaagtaagtttttatttttcctccattGTATAAATTAAGTCTTGCTACAAACCTGAGATGCATTTCCTACGGGTTTGCGTAGATCAGTTTCTACAGCTCTCTGGAGTACACTTGGAGATTTCCACGGTGCAGAGGACACAGCTAACAGTATGATTCCAGCTTTTTGTTCACTAGGTAGTACTGAAAAAGAGCTCTTAAGCTCCATTATggcaatatacacattttacctTTTTGGTGCCTACAGAATGATTTCTCAATCAAACACAGAAGTGAATGGCAAAATCTGATGAATAAAGTAGGATAATTTATCAAATAAAAGATTTTTGAAGGggagaaaagtgaaatgcatgtgCAAGAAATTACTCATGTTAAACGAGTTAATCTAGTTCCACAAGAACAGTAGGGaccaaaaatatgcatttaaaatacaacactttaaaataagcagGCCCCAGAGACCAGCAGCAACCAGGTGCATCAAATAGAAAAACCTATTTTAAAGGAGTAAAATAAGATATTCATATCCACTTCAGGTTACACTGTAGAAGAAAACGATTTATTaactgtttaaataaagcaacTCAACATAAGGTTCATATCCTCAAATAAAAGTAACTTCTATAGAgtaaaaagttttattttatatggggaaaaaaaaataaaaataaacatacatacaatttaccggtatttgaaattaacaatattaagaGGTTAAACCTGTATACCAAGAATACAATGAGACATTAAGGTATGCGAAAAGTAGGTTTTGCTTTCCGTGCTTGTACTTGATTCTGAAGTCCATTTTGTTTAAGGATTTAACTGGAGAGTtggggggggaggaaaaaaaaaaaaaaagcttcagatAAAACCTGTAAACGGGTCTTATAAATCCTCATCTTTTGCAAAAATCTGAATGGTTCACAACAACTATAACAAGAGGTTCAGGTCAACTATTTAACATACACACTAACTGGAAGTCAAGTGCTGTCCTGGCGAAGGCGTAGGCGTTGTGGCTTTAGTAACAACGGCAGTGAACCTAGTTTAAAACAAGACCGTGACCTAGTCCTTAAAACAGGCTGCATGAATTTCCACTCAAGTCAAATAGTCACGACTGATAGCCATCTTATGCTGTAATACACTTTGGTATGGAGTTGGGAGAGGTTGCCTGTAAATAGACATGATTTTCTGATTTGCTCGTTGGCAGAACTAGCTGCTACCTAATTGAAATCAAGAGCTAAGGACTAAATCAAAAGTTCACTGCAATTGACCATTTCCTTTGAACCGGGACTCGAACATGGGGTCCCAGGGAAAACCACTTAATAAACTCAACttaaatacagataaaaaaaaaaaaaagtcaataaagttacacaaactaaaaagaaacaaagaaatgaaagctgtaaaaataaagaccTAAAATAACAAGCAATATTTCTAATCTTAACTGAGATTTTATTtagaatggaaaaataaaaaacacgtCTGGGAAGAATACAGTAAACTGCAACATTAGATGTCCCCCACccttgaaattaaaacataagaaaaacgGAAGAATCCAGAGATGTAGTCCTACACCTTGATAGGAAACGCGGCCTAGTAAATTTGGGAAAGAAGATCGACGACATCTGCCTCCTAGATCTGAGTAGTAGCTGGGGTTTCTATATGGAGGTGGCCATTTTATGATCAGGCTTCCTGGTAAGGGCCTCCCTACCTGCTTGGGTCAGCCtggaagtgtgtgtgggggggaggggtctCCTTTCATAACCACAGGTTGGGGTTCACAGTGTTCCAGTCAATCCCATGCCAAAATATCGGTTGATCTAAAGTGTTCAGAAAATGCTTGCGGGTAATCTGTGAGGTCGGAGATTTGAGATTTGGCTAGGAGATGGAGCTGCCCCTTGTGTCGCGGTTAAACACGCACAAAGCGGGAGCGCTTGAGGCCTCTTTAATATGAGCCTCCATAGCCCCCCCTGCCGTAGCCTCCGCTACCACCACCTCGGGAGTAAGGAGTGCTGCTTCTGCCCGAGTAATTACCTTTCATTGGGCCATAACCGGAGGACTGCTGGCCATACCCGCTGCCAAAGTCATTGTAGCCGTTCCCGCCGCCGTAGCCGCCCATCTGGTCACCATAGCCCCCTCCATAGCCGCCGCCGTAGCCCCCACCATAGCCGCCGCCGTAGCCGCCATCATTGCCTCCGTATCCGCCATAGCTGTTGTAGCCTCCACCTCCTCTCCCGCCGCCGTAGCCATTTTGATTCCTTCCCATTCCTCGCCCGCCTCTCCCTCGGCCGCCTCGGCCTCCGGCAGACTGCATCTCCTGCTTGGAGAGAGCCTTCTTCACCTCGACTTTGTTCCCGTTGATAGTGTGGTATTTGACCACCACGGCCTTGTCGGCGGAGTCGTTGTCTTCATAGTAGACAAAGCCGAAGCCCCGCTTCTTCCCGGTCTGCTTGTCGGTGATGACTTCGGCCTTCTCGATGGCGCCGTACTGGGAGAAATACTCGGTGAGGTGCTCGTCTGTCACATCTTCCTTCAGGCCACCGACGAAGATTTTCTTGACTTTGGCGAGGGCCTCGGGTTTGCCGGCGTCTTCCCGGGCCACGGCCCGTTTCAGCTCCACGTTGTTACCATCGACAACGTGCGGCCTTGCTTCCATTGCGGCATCGGCCTCCCCCGGAGTCGAGTAGGTCACAAAGCCGAAACAGCGGGAGCGTTTGAGCTGCTGGTTTTGGACCACCACGCAGTCGGTCAGCTGGCCATACTGCTCGAAATGTTTGCGGAGACCATCGTCTGTGGTCTGTACGTTTAGGCCACCGACAAAGAGCTTGCAAAGTTGGTTCtccattttgatatttttttttttttcgtaaaTTTCAGCTGTCCGCCCTCAGCTTTTCCGCTCCTTGTCGCAGCAGTGCTGTGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134042 lncRNA downstream 58603 26311843 ~ 26329609 (-) True G107166
TU133934 lncRNA downstream 190379 26196112 ~ 26197833 (-) True G107082
TU133901 lncRNA downstream 260447 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 369479 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 371532 26015984 ~ 26016680 (-) True G107038
TU134130 lncRNA upstream 424190 26833565 ~ 26833850 (-) True G107232
TU134131 lncRNA upstream 428792 26838167 ~ 26842786 (-) True G107233
TU134137 lncRNA upstream 501140 26910515 ~ 26910758 (-) True G107237
TU134138 lncRNA upstream 502633 26912008 ~ 26912220 (-) True G107238
TU134141 lncRNA upstream 506137 26915512 ~ 26915968 (-) True G107241
AMCG00011479 mRNA downstream 10833 26370173 ~ 26377379 (-) True AMCG00011479
AMCG00011481 mRNA downstream 18345 26369321 ~ 26369867 (-) True AMCG00011481
AMCG00011480 mRNA downstream 20096 26362391 ~ 26368116 (-) True AMCG00011480
AMCG00011482 mRNA downstream 26157 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011475 mRNA downstream 53451 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011484 mRNA upstream 37205 26446580 ~ 26490473 (-) True AMCG00011484
AMCG00011485 mRNA upstream 100339 26509714 ~ 26516336 (-) False AMCG00011485
AMCG00011486 mRNA upstream 161797 26571172 ~ 26641966 (-) True AMCG00011486
AMCG00011487 mRNA upstream 279039 26688414 ~ 26731680 (-) True AMCG00011487
AMCG00011489 mRNA upstream 395507 26804882 ~ 26818358 (-) True AMCG00011489
TU133710 other downstream 1369880 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3327246 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6520310 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6975197 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7282943 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 97568 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3215709 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014399 False 2402 mRNA 0.44 1 NC_007125.7 24277556 ~ 24279957 (+)