RNA id: TU134141


Basic Information

Item Value
RNA id TU134141
length 457
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G107241
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26915512 ~ 26915968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCTATGGCGATGCGTGCTGCCTTGTTTGTGCGTTTCATAGCTGACAGGCACGTTGGCAGGTGAGAGGAGGAGCTTCTTTAGCTGTGGGGAGAAGTTTGGGAACAACTGTAATTCACAAATAAAGCTCTCGGGCCTCACAGACACACCACAACAGCACAATTTACACCCACCCCCCTACACCCCACCTTCACCAGAAACTACAAGCCTAAATTAACCCCACATGAGAACTCAAAGTCAAAGTCATTCATAACACAAGGAGTCCTACAAACAAGGCTTTTGCTTCTTCTGATTTAGCTTTCCCATTGGTCCACATTCATTTATATTCTCTCCAAAATCAGTAGacattgtatacatacataatatatacatatatatgtatatgtatttgatcAGTTTTGCATGTACACCATGAAAACATGTTATTACCCTCCTGTttagggaaatatatatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134138 lncRNA downstream 3292 26912008 ~ 26912220 (-) True G107238
TU134137 lncRNA downstream 4754 26910515 ~ 26910758 (-) True G107237
TU134131 lncRNA downstream 72726 26838167 ~ 26842786 (-) True G107233
TU134130 lncRNA downstream 81662 26833565 ~ 26833850 (-) True G107232
TU134049 lncRNA downstream 506137 26388212 ~ 26409375 (-) False G107167
TU134175 lncRNA upstream 156519 27072487 ~ 27072708 (-) True G107275
TU134190 lncRNA upstream 330996 27246964 ~ 27247180 (-) True G107289
TU134192 lncRNA upstream 331771 27247739 ~ 27286457 (-) True G107290
TU134199 lncRNA upstream 361015 27276983 ~ 27279308 (-) True G107296
TU134193 lncRNA upstream 365986 27281954 ~ 27292313 (-) False G107290
AMCG00011489 mRNA downstream 97154 26804882 ~ 26818358 (-) True AMCG00011489
AMCG00011487 mRNA downstream 183832 26688414 ~ 26731680 (-) True AMCG00011487
AMCG00011486 mRNA downstream 273546 26571172 ~ 26641966 (-) True AMCG00011486
AMCG00011485 mRNA downstream 399176 26509714 ~ 26516336 (-) False AMCG00011485
AMCG00011484 mRNA downstream 425039 26446580 ~ 26490473 (-) True AMCG00011484
AMCG00011492 mRNA upstream 15418 26931386 ~ 26943383 (-) True AMCG00011492
AMCG00011501 mRNA upstream 499220 27415188 ~ 27423491 (-) True AMCG00011501
AMCG00011503 mRNA upstream 581341 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011506 mRNA upstream 682146 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011507 mRNA upstream 704541 27620509 ~ 27639480 (-) True AMCG00011507
TU134083 other downstream 399005 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 1897180 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3854546 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 7047610 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 7502497 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 2709116 29625084 ~ 29625387 (-) True G107713

Expression Profile