RNA id: TU134242


Basic Information

Item Value
RNA id TU134242
length 3062
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G107331
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27497327 ~ 27501442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cTTGACAAGTCTAggatattgtaattgtaatgaaCTATTAACATTATATGGATCATATacagctatttttatttatatggctTTATGGAATTTTGTCCTTTTCTGCACCCAGACATCATTTGCGGTCTACTTTTAAGCCAATAGAAGTGGACTCAAGTAGAATATGACCTCACCCTTTTAAAATGGGCCGATACCATTCCTATCCTTAGTGAAAAAGTGTGACACGCAAGAACAGTAAAAAGGCATGCCAGCTGCTTAGCAGAGATTGTAGTAAAACGTAAGTAGGCTGACACACAGGGCTCCGATTCATAAAGAATTAGCCTCTTTCAAAATGTACGGGTCTGCAAATGCTTTATGGAAAGGGGCCCCTGGGAACTTGTGCACACAGACCTCTCTCTTCACATCCTCTCAGAGGATTATGGACTAAAGTACAGGCTCAGAAGATGTTTTGGGGTTTAAAGTAAACGCTTCAtaagttattaatcaattatcaGATCTACAGCCTCCTTTTAACCCTTAACAAAGCCCAcgataataaaagcaaaaataaaataaaataaacaaatccttaAATTTTAAAGATTCCAACCAtgataacacaaaaacaatcaaacaaacaaaaaaagcacgaAGACAATTGGAAAATCCAGCAGAGATGgtagaggggagagggggataaaaatcacattttagatCTCTGCTGTCAGGGAGTTGAGTAactgatgggggggggggttgggctTACAGAGATGCAAGGAAAGTCTGTTCAGCTGACAGATCTGCTGCTGCCAATTCAAGGGCCCTTTAACatcttttaacctttttgttataaaattcaggagaaaatgaaaacagaaagggTTGACTTTGGCTCAATAAGCATGTAATGGAAAGTCTAGACGGCTCCAACCAAATTTGCGCCCGACTTGCAATTTGTAAACcgaaaaaacaaataaccaaataaaattaaatcctGCAATGTTCATGTTCAATCGTTGGTTTTGCATTACCCTTTTACCGAAATCTAAAGTTGCTTTCCCACACAGACCTCTGATGCcaatttcccttttttgttttgttatcacATGGTCTAGAAATACATAGTGATGGCAACTATTTCACATATGCAACACTGATATAACCATCTGTAGAGTAGaacacagcaaaaataaaaacttaaaagcattaaaaagatATAATGAGaccatttctttaaaatatatactacatACACATGTAGggaaaatatatagatttttctataaacaaaataattaaaacgtGGGAGGTCAGattgaaagagtaaaaaaaaaaaaagtcataaatgGTCAGGTTGAACTTAAATCTCAGGAACCTCAATAGggatttgcattacattttcatatatatatatattttttttatcagaacGAAGATTCACCTATTCAACTGGGATGGAAATTccaaaggaataaaacaaaaaacaatataaaaaaatgcagtttttcagGGCAAGAACATAGTGCTCTCATCGCACAGACAGGGTTTCGATGTCAAGGGAAGGGTCTATCTTATTGGCAGCATAGTGTGTGTGCGGAATAAAGTATCACTTAGCTAATACCTAGAAAACTGCGTCATTTGTTTTCGATTTGTTTATCATGTCATGCATTTACAAGATGCGTCTGTGTGGCTAAGACACCTTAGGCACTCCGTACCGAAGCAACCAATCAATTTGTTCcaaaaagcagcatttttatgccTCAAGATATCCTTTTCAAGCATTGTTGGATAAATATGACATTAAAAAGCACCCACAACTTAAGGTGTACTGtgataacctttttttttttttttcttttttcttcttttttcaagTATTCAGAATTAGTAATTCCAGTCATCTCGAGTTCCATGAAAGATGAAAGCAAACATATGTCCATTTGGGTACCAGTGTCCCCCCACAGAACTTCAGCACAAAAAGCTCATAAATGCAAATGCACCCACActaggattttcttttcttttttttttgtaacagacCAGATGAAACTTGGAAGACGATAACCAGCAAAAAGGTAGACAAAAAGCTGTTGGTGGAATTGACAACTTTCACTGTATGATGCCTGCAGTCTCGCATTGCAATTAAATGTTGTAcaatcaacaacaacattaagGGTGGCAGGCGTAAAATGAAGCAAAAAGCGGTAAAATAAGGCAACTTTTAAAGATCCTGCTCATGATGAGGGATTGGTACAAGTCTGTAatgaagttttgttttaatgttttttttcccccccatctttttttttttttttctttctttcttttctttatccTGCCCCAAACCAGTCAAGTAAACCTTACTTTCAACACAAAAGTCTCCAATCCACCTtctaaacaaaatgacaaaggTCCAGGTTAAAGTTGAGGAAGGAAGGAAACGTCGTCCTAGAGCCCAGATCATGGTGTCATTGGGAAAGGGGGTCCAAAGACTGAGAGGGAGCGGGGAGCCACTAATAGTTATTTTGCCATTGGCTTAAGTGGTGGCAAAAACCATATccatcaaaactgaaaaaaaataaaaataaaaaaaatacatgattgtCCTGGTTAGAATGAAAGGCTGCATTTgcaaaaacttttaAATTAAAACAAGCACTTCTTCATTCTTTCAGTAGTCTTTCAGTCTATCTCTCAGAGATGAAATGTTggtgtttaaacaaacaaaaacttcaaAAAGGAAGAGCATCGATCCTGACACCACAAACCAGCActgcttgtttcttttcttttcatgcttGCATTAACATTTGGACCCCCTGtggttaaaacaatattaaaattaaattaaactgcgCCCGCGCCCCCCGGATCACTCCTGGGGCTTGGGCTCGGACACTGTTGTGGAAGCAGCTGCTCTCTGGCTCAGGTTTTTGGCATCATCTCGGGGACCCCCCTGCAAGGGCTGGACTGGGCTGTGCCCGGCTTGGCTGACGGGCCGGCTGGAAGACTGAGAGGGGTAGCGGCGTCTGCCCTCTCCACTTGACGAATGTCTCTTCCGCCCTCCCTCCTCACCCATGGGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134230 lncRNA upstream 28760 27467404 ~ 27468567 (+) True G107321
TU134125 lncRNA upstream 654549 26839441 ~ 26842778 (+) False AMCG00011488
TU134004 lncRNA upstream 1045752 26447202 ~ 26451575 (+) True G107128
TU134002 lncRNA upstream 1109343 26387748 ~ 26387984 (+) True G107126
TU133952 lncRNA upstream 1204880 26277374 ~ 26292447 (+) True G107098
TU134298 lncRNA downstream 112519 27613961 ~ 27615738 (+) True G107382
TU134320 lncRNA downstream 289424 27790866 ~ 27830847 (+) False G107402
TU134321 lncRNA downstream 289424 27790866 ~ 27874138 (+) True G107402
TU134329 lncRNA downstream 381653 27883095 ~ 27883396 (+) True G107408
TU134387 lncRNA downstream 786708 28288150 ~ 28288391 (+) True G107450
AMCG00011502 mRNA upstream 684 27484188 ~ 27496643 (+) True AMCG00011502
AMCG00011500 mRNA upstream 15337 27472631 ~ 27481990 (+) True AMCG00011500
AMCG00011499 mRNA upstream 173382 27321672 ~ 27323945 (+) True AMCG00011499
AMCG00011497 mRNA upstream 198754 27297331 ~ 27298573 (+) True AMCG00011497
AMCG00011498 mRNA upstream 201504 27288443 ~ 27295823 (+) True AMCG00011498
AMCG00011505 mRNA downstream 54858 27556300 ~ 27583803 (+) True AMCG00011505
AMCG00011504 mRNA downstream 90213 27591655 ~ 27595004 (+) True AMCG00011504
AMCG00011510 mRNA downstream 394074 27895516 ~ 27906851 (+) True AMCG00011510
AMCG00011511 mRNA downstream 406950 27908392 ~ 27915999 (+) True AMCG00011511
AMCG00011512 mRNA downstream 450857 27952299 ~ 27958923 (+) True AMCG00011512
TU134126 other upstream 667272 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 726113 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 1136552 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 3744325 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 4140768 23356062 ~ 23356559 (+) True G106618
TU134311 other downstream 210764 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 2196159 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 2356528 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 2670346 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 3482537 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile