RNA id: TU134299


Basic Information

Item Value
RNA id TU134299
length 1804
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G107383
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27613935 ~ 27615738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNaaacctgtggaggaacggagaaaacaggagccagaccctgtaGGCGGAGGGACACTCTCTAAAGATgtgagcctccgtctccttccccaggcaacccttatAGGGGGAGGTGTCATAAGTTATtcgtgggtaggtcaaagttttgcttTGGTCTAGGTTTTCACCAGTGATGACTTATTTAAGCCTGGCCAATCCAGAACTGCCAGTTGTCAACCATGCACTGCCAAGCCATACTGTGGGTTCATGGCCAATCAGCAGAACTGTGGAATTATGGGTAGCCTTCACTGGAACAAGGGCATTctaagaataaaataagaaacctTTAATGCTTCCAGTTACCAATTCAGTTAAGATATAGAAGTAAAAAGACAAATCATTTTGCTTGTAGGGAGAGAATCTAATAAATTTAAGATTTAATAATCCACAGCAATATgaacagattaatttgtttttgttttttctttttaaccacATTCTAAATACGTGTAACTGTTAAAAAGGTAAAACCCCGAAATATAAGATAAAACCaaagattattttgtttgttttaaattttctCAGAATTGATCTGATCACTGAATTCTAGTGTACAATGGTCATTGTGTCCTTAATTCTTTAATAAGTCTTCATTTTGGATAttcttttatatgtatatatgtagtttgtgtgtttaaatcatgagttgtattttaattttagtttttttctgatgtCATATGGTTACTCAAAAATGGGAATAGTCAGTCCTTTTACTTTatctaatacattattatatttattttccccttatTTGATCGTGGAATGTGGATTTTATTAAATCTATACAGATCAGACATGATATTGGAACGGAATGTCCAGGACTAATTGAACAACAATGACCAGTAATATATCAAATGACTTTCCAAATGTCATTGTATATCTTTGATTTGggataaattaactatgtactaACAAATAGCACTactaataattttgtttttgaggttTACTTCAGCTGTGATGTTTGTATCTTTTGTTCTTTGATTATGATTTCTTACAAGTTTCCAAAGATCATATTTCATTGATTAAgcttctttaaataaataaagttaatggCATACGATTTGAGATAAGAATGAATGTGATTCAGTAGCAATGTGTACCAAGTTTGGCACTTTATTCAAGATAAGGCTGAATATTTCCAGCACACAAATTATGAGTTGATTTTAAGGTTCTTTCCTTtcagtattttttcattatgaaGAAAAATTGTCCTTAAGAATATTACACTTTTCCCTACACTTTTCTCCTTGTTCTAAATAGTATAATTTTATTAACTTCACATTAACACCTCAACTTCATCATGAAATATAGTGAGTGTAAATGCttgtatttttatacagtaTAGAAACTGTATTCTGTTCTGTAACTACTGGTCAAGTGTAAGTGCACTGTATTTAATCAagttttattcaaaatatgaaaaacattgGGAGGGAGgctaatacaattaatatttttatagttACAAGAGAACGATTTATACTATTCAAATCATTTGATATGAATTTCATAATTGACATACTGTTCAGCTACAACGTGGGAGTAATATTTgagtttttaacatttttaggTAGGTATCATTCAGTATGTGTAATTTTGATGTTTAGGGAATTaaagtgtacattttgtatCTCATAAATatccaatatttttttttgtactgacTTTTAGACATGAtgactgggggaaaaaatgtatttagatatTTAACAACTGTTCAACTAAACTGgaattgtataatatttttgctgacctgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134260 lncRNA downstream 64068 27547207 ~ 27549867 (-) True G107348
TU134213 lncRNA downstream 205198 27408518 ~ 27408737 (-) True G107308
TU134193 lncRNA downstream 321622 27281954 ~ 27292313 (-) False G107290
TU134192 lncRNA downstream 327478 27247739 ~ 27286457 (-) True G107290
TU134199 lncRNA downstream 334627 27276983 ~ 27279308 (-) True G107296
TU134325 lncRNA upstream 175157 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA upstream 175157 27790895 ~ 27839465 (-) True G107406
TU134330 lncRNA upstream 267310 27883048 ~ 27883580 (-) True G107409
TU134332 lncRNA upstream 271729 27887467 ~ 27887769 (-) True G107411
TU134413 lncRNA upstream 947329 28563067 ~ 28563577 (-) True G107471
AMCG00011506 mRNA downstream 6947 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011503 mRNA downstream 83982 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011501 mRNA downstream 190444 27415188 ~ 27423491 (-) True AMCG00011501
AMCG00011492 mRNA downstream 670552 26931386 ~ 26943383 (-) True AMCG00011492
AMCG00011489 mRNA downstream 795577 26804882 ~ 26818358 (-) True AMCG00011489
AMCG00011507 mRNA upstream 4771 27620509 ~ 27639480 (-) True AMCG00011507
AMCG00011508 mRNA upstream 54057 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011509 mRNA upstream 96402 27712140 ~ 27712957 (-) True AMCG00011509
AMCG00011514 mRNA upstream 276019 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011515 mRNA upstream 301195 27916933 ~ 27953143 (-) True AMCG00011515
TU134083 other downstream 1097428 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2595603 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4552969 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 7746033 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8200920 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 2009346 29625084 ~ 29625387 (-) True G107713

Expression Profile