RNA id: TU134330


Basic Information

Item Value
RNA id TU134330
length 533
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G107409
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27883048 ~ 27883580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtaactcgctgccacagcttaacctgtagctctgttgccagaactggAACCAGAAACGGAAcaaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattctttaaagaactttattcagttaaagaactttagaacctgcgcctgcccgcctgtacccatctgatcagtggagttttacagctggacaattgactaagtcgactgaatacgaaagtgtcagtcatttaaatagctattgagtcttaagaaactcgacccttggaaccaaacagggccctgctttcctcaaagactttgtcttcaagtaactacggtggaaaaaccctgcttgcaaagaagattttgtgcacacccttggagccttcaaaccagtggaaaatctgtttggaaaagactctgtttcgcgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagcctTTGTTCCacaccacacggacctcgtgtcttgtgctgttatctgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134325 lncRNA downstream 38041 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA downstream 43583 27790895 ~ 27839465 (-) True G107406
TU134299 lncRNA downstream 267310 27613935 ~ 27615738 (-) True G107383
TU134260 lncRNA downstream 333181 27547207 ~ 27549867 (-) True G107348
TU134213 lncRNA downstream 474311 27408518 ~ 27408737 (-) True G107308
TU134332 lncRNA upstream 3887 27887467 ~ 27887769 (-) True G107411
TU134413 lncRNA upstream 679487 28563067 ~ 28563577 (-) True G107471
TU134447 lncRNA upstream 782582 28666162 ~ 28666386 (-) True G107503
TU134553 lncRNA upstream 1049257 28932837 ~ 28933182 (-) True G107597
TU134561 lncRNA upstream 1050717 28934297 ~ 28967451 (-) True G107602
AMCG00011509 mRNA downstream 170091 27712140 ~ 27712957 (-) True AMCG00011509
AMCG00011508 mRNA downstream 203902 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011507 mRNA downstream 243568 27620509 ~ 27639480 (-) True AMCG00011507
AMCG00011506 mRNA downstream 276060 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011503 mRNA downstream 353095 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011514 mRNA upstream 8177 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011515 mRNA upstream 33353 27916933 ~ 27953143 (-) True AMCG00011515
AMCG00011517 mRNA upstream 140650 28024230 ~ 28025901 (-) True AMCG00011517
AMCG00011520 mRNA upstream 914650 28798230 ~ 28816286 (-) True AMCG00011520
AMCG00011521 mRNA upstream 940078 28823658 ~ 28851487 (-) True AMCG00011521
TU134083 other downstream 1366541 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2864716 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4822082 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 8015146 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8470033 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 1741504 29625084 ~ 29625387 (-) True G107713

Expression Profile