RNA id: TU134332


Basic Information

Item Value
RNA id TU134332
length 303
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G107411
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 27887467 ~ 27887769 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaccgttctcatgatcattgaaacaccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatcctaggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgaga

Function

GO:

id name namespace
GO:0017119 Golgi transport complex cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134330 lncRNA downstream 3887 27883048 ~ 27883580 (-) True G107409
TU134325 lncRNA downstream 42460 27790895 ~ 27845007 (-) False G107406
TU134327 lncRNA downstream 48002 27790895 ~ 27839465 (-) True G107406
TU134299 lncRNA downstream 271729 27613935 ~ 27615738 (-) True G107383
TU134260 lncRNA downstream 337600 27547207 ~ 27549867 (-) True G107348
TU134413 lncRNA upstream 675298 28563067 ~ 28563577 (-) True G107471
TU134447 lncRNA upstream 778393 28666162 ~ 28666386 (-) True G107503
TU134553 lncRNA upstream 1045068 28932837 ~ 28933182 (-) True G107597
TU134561 lncRNA upstream 1046528 28934297 ~ 28967451 (-) True G107602
TU134600 lncRNA upstream 1314796 29202565 ~ 29203192 (-) True G107638
AMCG00011509 mRNA downstream 174510 27712140 ~ 27712957 (-) True AMCG00011509
AMCG00011508 mRNA downstream 208321 27669795 ~ 27679146 (-) True AMCG00011508
AMCG00011507 mRNA downstream 247987 27620509 ~ 27639480 (-) True AMCG00011507
AMCG00011506 mRNA downstream 280479 27598114 ~ 27606988 (-) True AMCG00011506
AMCG00011503 mRNA downstream 357514 27497309 ~ 27529953 (-) True AMCG00011503
AMCG00011514 mRNA upstream 3988 27891757 ~ 27895311 (-) True AMCG00011514
AMCG00011515 mRNA upstream 29164 27916933 ~ 27953143 (-) True AMCG00011515
AMCG00011517 mRNA upstream 136461 28024230 ~ 28025901 (-) True AMCG00011517
AMCG00011520 mRNA upstream 910461 28798230 ~ 28816286 (-) True AMCG00011520
AMCG00011521 mRNA upstream 935889 28823658 ~ 28851487 (-) True AMCG00011521
TU134083 other downstream 1370960 26506943 ~ 26516507 (-) True AMCG00011485
TU133710 other downstream 2869135 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 4826501 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 8019565 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 8474452 19410368 ~ 19413015 (-) False G105970
TU134703 other upstream 1737315 29625084 ~ 29625387 (-) True G107713

Expression Profile