RNA id: TU134632


Basic Information

Item Value
RNA id TU134632
length 1663
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G107661
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 29321964 ~ 29323626 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCCACTGTTTTTAAAGTGCAAAGTTGGGCAACTGCAATACCAGACtctacttcatttatttttgtacttgaGATGGCAAAGGATGTATAGCTTAGATGTTTGTGATTTCTACAGATGTTTACTCTTGCTCTACTATAACTTGGAAAGGCTGGCAGTTGTATATGTttcctgaatatatatatttttaaatagggaGGTTCTTTACATTCAGGGCTAGATTTGACCATGcccacaaacacactgacacacacctgtgAGTAGAGTGGCACAGTTGGTTTGTGCTTGGTCTAGGGTCTGCCTGTCCCACATACTTGCTAACCAGTCTGGACAGTGTGAGTCATACTACATCATTCAATGCTGGAGAGATCTTAATCtacaaagggggggggggggactggcGATGatgatattgatttatatacagATTGCACGTCTCtgctctctgcctgtctgtatTCACCTCTTCAGAGTCATCGAGTGTTATTCGTGACTGCTTTAGATCTATGGATAGTCATTCTAGGGAGTACTTTGGCCTTTTTGGCTGTACAATTGATGATTGCCATGGCCAATTGCtcatttttaacaatttttaactgtttttcagtttacaCTTAACCACTACTGTCCTCAGTCCAATGCATTTGCATCCTCTGTGTTTGAAATAGCTGCAGTGTTGCCCAGCTACATGAATACTTGAAGTACAATCTGCAGTTTAATGTTGGTAGCTGTGAGGGTGGGCTCGTACTTGTTTCAAATGGTCATGACTACCAGGTGCtccttttaaagtgtttttatttttattttttattgcctTATACATAAAACTATCAATGCGTGTATGTTTCATTAatcttttattgatttttttttttttttttttttttacgatgtGTATACTCtgaattttctgaaatgtaatgtgtattttgtacaCCTTTCATATATGCAAAGGATGACTATATGTATTGTGCTGCAGTTATGAGAgaaggtttattattattaataataatataaactgtCTTATCAGCTATTACTCTGCTGTGGCCAATAAGTGGTGTTCCAGCTGCTAGAATAGAAGTGTGTTCCTTATATTCAGTGACCATAACATCTGTACAGTTGTCAGGAAAAGTTTGGCTTGTCTGGTGGTATGAATTTCATCATGCAATCTCCACCAAAAACTGCAAGGAACAATACAAAATCCGTATCTTGTATCAGATATTCATTATAGATGAATGTCAACTGTAGAATCTATGGAGATACTGCTTTATTGTTTAACTTGTCTTTAtactggtattttatttatttttgacagtaacttcaaaagttttttttgttgttgttttactttctttccaTTCCATGACTTGAACACCTCCTTCCTCTGATAATTTGGGTTTCTCGGtttcattaaactgtttttttaaacctgtgtATAAAACCCTACACTGTGTTGGACTCCCTGTCTGAAAGACACTATCTCATATATGGACTACATGGGATTGGCATCTTGCGCTAGTGTCCAATATAACCAATGCCTTTGCTAATGTATTGGGTAACTCAGAGATACCCATTTAATTTCAACTTTGTtaaaactacactacacttttAACCTATTTGAAgatcaacatgtttttttattttttaaaaactgtattaacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134578 lncRNA upstream 160222 29081231 ~ 29161742 (+) True G107618
TU134502 lncRNA upstream 445609 28870570 ~ 28876355 (+) False AMCG00011519
TU134477 lncRNA upstream 458207 28795887 ~ 28863757 (+) True G107530
TU134459 lncRNA upstream 607475 28714123 ~ 28714489 (+) True G107513
TU134446 lncRNA upstream 655578 28666166 ~ 28666386 (+) True G107502
TU134644 lncRNA downstream 161246 29484872 ~ 29490870 (+) True G107672
TU134699 lncRNA downstream 274375 29598001 ~ 29598243 (+) True G107709
TU134702 lncRNA downstream 301464 29625090 ~ 29625387 (+) True G107712
TU134704 lncRNA downstream 302115 29625741 ~ 29626058 (+) True G107714
TU134719 lncRNA downstream 352966 29676592 ~ 29676880 (+) True G107729
AMCG00011527 mRNA upstream 107 29279389 ~ 29321857 (+) True AMCG00011527
AMCG00011526 mRNA upstream 47469 29222351 ~ 29274495 (+) True AMCG00011526
AMCG00011525 mRNA upstream 182435 29118842 ~ 29139529 (+) True AMCG00011525
AMCG00011523 mRNA upstream 354226 28951310 ~ 28967738 (+) True AMCG00011523
AMCG00011519 mRNA upstream 446125 28869142 ~ 28875839 (+) True AMCG00011519
AMCG00011529 mRNA downstream 48253 29371879 ~ 29417263 (+) True AMCG00011529
AMCG00011530 mRNA downstream 94297 29417923 ~ 29436718 (+) True AMCG00011530
AMCG00011533 mRNA downstream 320542 29644168 ~ 29651012 (+) True AMCG00011533
AMCG00011538 mRNA downstream 679574 30003200 ~ 30057500 (+) True AMCG00011538
AMCG00011542 mRNA downstream 858776 30182402 ~ 30194886 (+) True AMCG00011542
TU134311 other upstream 1594097 27712206 ~ 27727867 (+) True G107394
TU134126 other upstream 2491909 26818052 ~ 26830055 (+) False AMCG00011488
TU134100 other upstream 2550750 26770438 ~ 26771214 (+) True G107202
TU133992 other upstream 2961189 26356167 ~ 26360775 (+) True AMCG00011476
TU133489 other upstream 5568962 23748674 ~ 23753002 (+) True G106711
TU134734 other downstream 373975 29697601 ~ 29699419 (+) True G107741
TU134787 other downstream 534344 29857970 ~ 29875476 (+) True G107784
TU134867 other downstream 848162 30171788 ~ 30212090 (+) True G107858
TU135008 other downstream 1660353 30983979 ~ 31173789 (+) True AMCG00011551

Expression Profile